EG358200

Overview
NameEG358200
Unique NameEG358200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:1..461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAT (Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 9.524e-59
Identity = 110/153 (71.90%), Postives = 122/153 (79.74%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPN+VVFLNK                     S Y+FPGD+VP+++GSALLALE+L  NP I +GEN+WVDKIY LMD VD+YIP P+R TD PFL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNVVVFLNKEDQVDDAELLELVELEVRETLSDYDFPGDEVPVVAGSALLALESLTQNPKIVKGENKWVDKIYSLMDQVDAYIPTPERDTDKPFLMAVEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_CHLVU (Elongation factor Tu, chloroplastic OS=Chlorella vulgaris GN=tufA PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.771e-58
Identity = 110/153 (71.90%), Postives = 120/153 (78.43%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDG ILVVSGADGPMPQTKEH+LLAKQVGVPN+VVFLNK                       YEFPGD++PIISGSALLALEAL  NP  K G+N+WVDKIY LMD VDSYIP P+R+T+ PFL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGGILVVSGADGPMPQTKEHLLLAKQVGVPNIVVFLNKEDQVDDAELLELLELEIRETLDKYEFPGDEIPIISGSALLALEALTENPETKPGDNKWVDKIYNLMDQVDSYIPTPERETEKPFLMAVEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_OSTTA (Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.053e-57
Identity = 110/153 (71.90%), Postives = 123/153 (80.39%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPN+VVFLNK                     SSY+FPGD++P+I+GSALLALEAL +NP I  GE++WVDKI+ LMD+VDSYIP P R+TD  FL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVDMEIRETLSSYDFPGDEIPVIAGSALLALEALSSNPKIGDGEDKWVDKIFSLMDNVDSYIPTPARETDKTFLMAVEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_MESVI (Elongation factor Tu, chloroplastic OS=Mesostigma viride GN=tufA PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.064e-57
Identity = 107/153 (69.93%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK                     +SY+FPGD++P+++GSAL+ALEAL  +  + RG N WVDKIY LMD VD YIP PQR TD PFL+A+EDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKEDQVDDPELLELVELEVRETLNSYDFPGDEIPVVAGSALMALEALTQDSKLARGSNPWVDKIYALMDQVDKYIPTPQRDTDKPFLMAIEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_LEPTE (Elongation factor Tu, chloroplastic OS=Leptosira terrestris GN=tufA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 6.825e-57
Identity = 107/153 (69.93%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPN+VVFLNK                      +YEFPGD++PI+ GSALLAL+AL  NP I  G+N WVDKI++LMD+VD+YIP P+R T+ PFL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNVVVFLNKEDQVDDAELLELVELEVRETLDNYEFPGDEIPIVPGSALLALQALSENPEITPGQNPWVDKIFKLMDTVDAYIPTPERDTEKPFLMAVEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJB (Elongation factor Tu OS=Synechococcus sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.520e-56
Identity = 108/153 (70.59%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVS ADGPMPQT+EHILLA+QVGVP++VVFLNK                     S Y+FPGDDVPII GSAL ALE + ANP  +RGE+ WVDKIYELMD+VDSYIP P+R  D PFL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPSLVVFLNKADMVDDPELLELVELEVRELLSKYDFPGDDVPIIRGSALKALERMTANPKTQRGEDPWVDKIYELMDAVDSYIPTPERDVDKPFLMAVEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAK (Elongation factor Tu, chloroplastic OS=Pseudendoclonium akinetum GN=tufA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.520e-56
Identity = 107/153 (69.93%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEH+LLAKQVGVP +VVFLNK                       YE+PGDD+PII+GSALLALEAL+ NP++K GEN+WVDKI +LM +VD+YIP P R+TD  FL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPTLVVFLNKEDQVDDPELLELVELEVRETLDKYEYPGDDIPIIAGSALLALEALIENPNVKPGENEWVDKILKLMQNVDTYIPTPVRETDKTFLMAVEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_SYNP2 (Elongation factor Tu OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tuf PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.594e-56
Identity = 106/153 (69.28%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDG ILVVS ADGPMPQT+EHILLAKQVGVP++VVFLNK                     S Y+FPGDD+PI +GSAL A+EAL+ANP+IKRGE++WVDKI  LMDSVD Y+P+P+R  D PFL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLAKQVGVPSLVVFLNKEDQVDDEELLELVELEVRELLSEYDFPGDDIPITTGSALKAVEALVANPNIKRGEDKWVDKILALMDSVDEYMPLPERDVDKPFLMAVEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_OLTVI (Elongation factor Tu, chloroplastic OS=Oltmannsiellopsis viridis GN=tufA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.594e-56
Identity = 107/153 (69.93%), Postives = 120/153 (78.43%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEH+LLAKQVGVP +VVFLNK                      +YEF GDD+PII GSALLALEAL+ +P  K+G+N+WVD IY LM++VDSYIP P+R TD PFL+AVEDVFSITGR
Sbjct:   83 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPKIVVFLNKKDQVDDDELLELVELEVRETLDNYEFDGDDIPIIPGSALLALEALIESPEAKKGDNEWVDCIYSLMENVDSYIPTPERDTDKPFLMAVEDVFSITGR 235
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.424e-56
Identity = 106/153 (69.28%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVS ADGPMPQT+EHILLA+QVGVP++VVFLNK                     S Y+FPGD++PII GSAL ALE + ANP  +RGE+ WVDKIYELMD+VDSYIP P+R  D PFL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPSLVVFLNKVDMVDDEELLELVELEIRELLSKYDFPGDEIPIIRGSALKALERMQANPKTQRGEDPWVDKIYELMDAVDSYIPTPERDVDKPFLMAVEDVFSITGR 234
The following BLAST results are available for this feature:
BLAST of EG358200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CHLAT9.524e-5971.90Elongation factor Tu, chloroplastic OS=Chlorokybus... [more]
EFTU_CHLVU2.771e-5871.90Elongation factor Tu, chloroplastic OS=Chlorella v... [more]
EFTU_OSTTA1.053e-5771.90Elongation factor Tu, chloroplastic OS=Ostreococcu... [more]
EFTU_MESVI3.064e-5769.93Elongation factor Tu, chloroplastic OS=Mesostigma ... [more]
EFTU_LEPTE6.825e-5769.93Elongation factor Tu, chloroplastic OS=Leptosira t... [more]
EFTU_SYNJB1.520e-5670.59Elongation factor Tu OS=Synechococcus sp. GN=tuf P... [more]
EFTU_PSEAK1.520e-5669.93Elongation factor Tu, chloroplastic OS=Pseudendocl... [more]
EFTU_SYNP22.594e-5669.28Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_OLTVI2.594e-5669.93Elongation factor Tu, chloroplastic OS=Oltmannsiel... [more]
EFTU_SYNJA4.424e-5669.28Elongation factor Tu OS=Synechococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank description10d5 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0010d5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358200 ID=EG358200; Name=EG358200; organism=Citrus sinensis; type=EST; length=461bp
TGCCCTGGCCACGCCGATTATGTTAAGAATATGATTACTGGCGCTGCCCA
AATGGACGGTGCGATTTTGGTGGTGTCCGGTGCTGATGGGCCAATGCCAC
AAACTAAAGAACATATTTTGTTGGCTAAGCAAGTGGGTGTCCCTAACATG
GTTGTGTTTTTGAATAAACAGGACCAGGTTGATGATGAAGAGCTGTTGCA
ACTTGTGGAATTGGAGGTTCGTGAGTTACTTTCTTCTTATGAATTTCCTG
GTGATGATGTGCCTATTATTTCTGGTTCTGCGCTCTTAGCTTTAGAGGCT
TTGATGGCTAATCCTAGTATTAAGAGAGGAGAGAATCAATGGGTTGATAA
GATTTATGAGCTTATGGATTCTGTTGATAGTTACATTCCTATCCCACAAA
GACAAACTGATTTGCCCTTTTTGTTAGCTGTTGAAGATGTGTTTTCAATT
ACTGGTCGTGG
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