FC921859

Overview
NameFC921859
Unique NameFC921859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length220
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_STRLI (Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragment) OS=Streptomyces lividans PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.533e-13
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 159
            H+E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:   92 HVELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 144          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.533e-13
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 159
            H+E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:  396 HVELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 448          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.136e-11
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 162
            HLE+TG  VTEC+GG   +  DDLS+ Y + CDPRLN  Q+LELAF++A+  R+
Sbjct:  413 HLELTGDAVTECLGGGAGLDEDDLSTNYTSFCDPRLNEKQALELAFLVADHYRQ 466          
The following BLAST results are available for this feature:
BLAST of FC921859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AROF_STRLI3.533e-1360.38Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragm... [more]
AROF_STRCO3.533e-1360.38Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR1.136e-1155.56Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]

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Properties
Property NameValue
Genbank descriptionC06053C03T7 RindPdigS Citrus sinensis cDNA clone C06053C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921859 ID=FC921859; Name=FC921859; organism=Citrus sinensis; type=EST; length=220bp
CATTTGGAGATGACAGGCCAGAATGTGACAGAGTGCATCGGTGGGTCAAG
AACAGTGACATTCGACGACTTGAGTTCACGCTACCACACCCACTGTGACC
CTAGGCTCAATGCTTCACAGTCACTTGAGCTTGCCTTCATCATTGCCGAG
CGCCTCAGAAAGGGGAAGATTAGCTCACAGCAACCTCTTGCCTCTTCTTC
TCTCCTGTAGAATGGCCCGA
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