CX676117

Overview
NameCX676117
Unique NameCX676117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676117 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.627e-18
Identity = 75/287 (26.13%), Postives = 129/287 (44.95%), Query Frame = 1
Query:    1 EIPIPVIDFNELEGENRKKTMALLHQACEKWGFFQVDNHGIDKKLMEKVKQLVNSHYE----EYLKGGFYDSELVKSLEKENKNNIRDVDWESTFFIWHRPSSN------INE--IRNLSEDFRNTMED----YIAQLIKLAEKLSELMCENLGL---EKSYIKNAFSGEKGPSVGTKVAKYPQCPYPELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPXKNGSRLSIATFYNPANDAIISPAIKLL 804
            E+ + +ID     G  R   +  + +ACE+ GFF V NHGI+  L+E+  + +++ +     E  +      E               + W+ T    +  + +      + E  +R L  +    + +    Y  ++ +L+ +L E++ E+LG+    + Y +  F  ++  S+  ++  YP C  P    G   H D   + +L QD  V GLE + +G W  I P R   + VN GD    LSN RY+S LHR +      R S+A F  P  D ++ P  +L+
Sbjct:   43 ELEVALIDVGA--GAERSSVVRQVGEACERHGFFLVVNHGIEAALLEEAHRCMDAFFTLPLGEKQRAQRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFF--QRNDSI-MRLNYYPACQRPLDTLGTGPHCDPTSLTILHQD-HVGGLEVWAEGRWRAIRP-RPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELV 322          
BLAST of CX676117 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17
Identity = 75/272 (27.57%), Postives = 131/272 (48.16%), Query Frame = 1
Query:   10 IPVIDFNELEGENRKKTMALLHQACEKWGFFQVDNHGIDKKLMEKVKQLVNS----HYEEYLKGGFYDSELVKSLEKENKNNIRDVDWESTFFIWHRPSSNINE----IRNLSEDFRNTMEDYIAQLIKLAEKLSELMCENLGLEKSYIKNAFSGEKGPSVGTKVAKYPQ---CPYPELVRGLREHTDAGGIILLLQDDQVPGLEF-FKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPXKNGSRLSIATFYNPANDAIISP 789
            IPVID  + + + +      + +ACE++GFF+V NHG+   L+ +++Q   +    H+    K G  D       ++   N   D+ W     +        ++     R+    FR  +E+YI ++ +++ K  E++ E L +E     +     K      ++  YP+    P  E + G  EHTD   +I LL+ +   GL+   KDG WV + P  +++ FV  GD ++V++NGR++S  HRV+     SR+S+  F  P     I+P
Sbjct:   27 IPVIDLTDSDAKTQ------IVKACEEFGFFKVINHGVRPDLLTQLEQEAINFFALHHSLKDKAGPPDP-FGYGTKRIGPNG--DLGWLEYILLNANLCLESHKTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEI-GFGEHTDPQ-LISLLRSNDTEGLQICVKDGTWVDVTPD-HSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAP 286          
BLAST of CX676117 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 69/280 (24.64%), Postives = 115/280 (41.07%), Query Frame = 1
Query:   10 IPVIDFNEL-----EGENRKKTMALLHQACEKWGFFQVDNHGIDKKLMEKVKQLVNSHYEEYL--KGGFYDSELVKSLEKENK----NNIRDVDWESTFFIWHRPSSNINEIR--NLSEDFRNTMEDYIAQLIKLAEKLSELMCENL-------GLEKSYIKNAF--SGEKGPSVGTKVAKYPQCPYPELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPXKNGSRLSIATFYNPANDAII 783
            IPV+D +       + + R + +  +  A   WG   +  HGI  +LM++++    + +   +  K  + +      L+        N     +WE   F    P    +         D+     D+  +   LA  L  ++   L        LEK+        + +    +  K+  YP+CP PEL  G+  HTD   +  +L +  VPGL+      WV        TI V+ GD +E+LSNGRY S LHR +  +   R+S   F  P  D+++
Sbjct:   58 IPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAHTDVSALSFILHNG-VPGLQVLHGARWVTAR-HEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVL 335          
BLAST of CX676117 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.467e-13
Identity = 75/292 (25.68%), Postives = 137/292 (46.92%), Query Frame = 1
Query:    4 IPIPVIDFNELEGENRKKTMALLHQACEKWGFFQVDNHGIDKKLMEKVKQ----LVNSHYEEYLKGGFYDSELVKSLEKENKNNIRDVDWESTFFIWHRPSSNINE-IRNLSED----FRNTMEDYIAQLIKLAEKLSELMCENLGL-EKSYIKNAFSGEKGPSVGTKVAKYPQCPY-------PELVR-------GLREHTDAGGIILLLQDDQVPGLEFFKD-GEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPXKNGSRLSIATFYNPANDAIISPAIKLL 804
            + IP ID + LE   R +   L+ +ACE++GFF+V NH + K+++ ++ +      + +  E  + G   +      +    N  +    E  + + H    +I+E  + +++D    F   + DYI  +  L  ++ EL  E L + +KS +      E   S+  ++  YP           P  ++       G  EH+D   I+ +L+ + V GL+     G W+ +PP  +   +V  GD ++VL+NGR+ S  HRV+      R+S+  F  P  + +ISP  K++
Sbjct:   18 VGIPTIDLS-LE---RSQLSELVVKACEEYGFFKVVNHSVPKEVISRLDEEGIEFFSKNSSEKRQAGT-STPFGYGCKNIGPNGDKG---ELEYLLLHSNPISISERSKTIAKDHPIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSL-LRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQ-ILTILRSNNVGGLQISTHHGLWIPVPPDPSE-FYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMV 298          
The following BLAST results are available for this feature:
BLAST of CX676117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GAOX1_ORYSJ9.627e-1826.13Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G2OX3_ARATH3.658e-1727.57Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
LDOX_MAIZE5.283e-1624.64Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G2OX2_PEA5.467e-1325.68Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_67C04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67C04-E7-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676117 ID=CX676117; Name=CX676117; organism=Citrus sinensis; type=EST; length=842bp
GAGATCCCTATTCCTGTGATAGATTTTAATGAACTTGAAGGGGAGAATAG
GAAGAAAACAATGGCCCTTCTGCATCAAGCTTGTGAGAAATGGGGCTTCT
TTCAGGTTGATAACCATGGGATAGACAAAAAGTTGATGGAGAAGGTGAAG
CAACTGGTGAACTCACACTATGAAGAATATTTGAAGGGAGGTTTCTATGA
TTCAGAGTTGGTTAAAAGCCTGGAAAAGGAAAACAAGAACAACATAAGAG
ATGTAGACTGGGAAAGCACCTTTTTCATATGGCATCGCCCATCCTCAAAC
ATCAATGAAATTAGGAATCTGTCAGAGGATTTCCGCAACACAATGGAGGA
CTACATAGCTCAACTAATAAAGCTAGCAGAGAAGCTTTCTGAGCTCATGT
GTGAGAATCTTGGTTTAGAGAAGAGTTACATAAAGAATGCATTCTCAGGG
GAAAAGGGTCCTTCTGTGGGGACAAAAGTAGCAAAATACCCTCAATGTCC
TTATCCGGAACTCGTCAGAGGACTACGAGAACACACTGACGCGGGTGGAA
TCATCCTCTTGCTCCAAGATGACCAAGTTCCAGGTCTTGAATTTTTCAAA
GATGGAGAGTGGGTAAAGATCCCTCCATCCAGAAACAACACCATATTTGT
TAACACAGGTGACCAAGTGGAAGTTTTGAGTAATGGGAGGTATCAAAGTG
CTTTGCACCGCGTCATGCCTGNAAAGAATGGAAGCAGACTCTCCATTGCA
ACCTTCTATAATCCTGCTAACGATGCTATTATTTCTCCAGCTATCAAACT
CTTATACCCCAGTTACTACAGTTTTCAAGACTACCTGAAGCT
back to top