CX676112

Overview
NameCX676112
Unique NameCX676112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.531e-36
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 1
Query:    1 QEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 276
            QEQP FDKKQFVT++KR+IKLLTPKL  E+QE FKKNIEGATKFLLSKLSDLQFFVGESM DD  LVFA YKEGATDP F+Y A  LKEVKC
Sbjct:   79 QEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.305e-36
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    1 QEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 276
            QEQP+FDKKQFV YMK++IK LTPKL  E++E+FK NI+GATK+LLSKLSDLQFFVGESM DD  +VFAYYK+GATDPTFLY+A  LKEVKC
Sbjct:   77 QEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVFKNNIQGATKYLLSKLSDLQFFVGESMADDTGMVFAYYKDGATDPTFLYLAHGLKEVKC 168          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.142e-35
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    1 QEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 276
            QEQP +DKK F+ Y+K++IKLLTPKLSEE Q +FKK IEGATKFLL +LSD QFFVGE MHDD  LVFAYYKEG+T+PTFLY A  LKEVKC
Sbjct:   77 QEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 6.233e-35
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 1
Query:    1 QEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 276
            QEQPAFDKKQF+ Y+KR+IK LT KL  E  + FKKN+E ATK+LLSKL DLQFFVGESMHDDG +VFAYY+EGA DPTFLY A  LKEVKC
Sbjct:   77 QEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.063e-34
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 1
Query:    1 QEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 276
            QEQP +DKK F+ Y+K++IKLLTPKL+ E+QE FKK IEGATKFLL KL D QFFVGE MHDD  +VFAYYKEGAT+PTFLY A  LKEVKC
Sbjct:   77 QEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEFKKGIEGATKFLLPKLKDFQFFVGEGMHDDSTIVFAYYKEGATNPTFLYFAHGLKEVKC 168          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.814e-34
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 1
Query:    1 QEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 276
            QEQPAFDKKQF+++MKR+IK L+ KL  +  ++FKKN+E ATK+LLSKL DLQFFVGESMHDDG +VFAYYKEGA DPTFLY A  LKEVKC
Sbjct:   77 QEQPAFDKKQFISHMKRYIKNLSAKLEGDDLDVFKKNVESATKYLLSKLKDLQFFVGESMHDDGGVVFAYYKEGAADPTFLYFAHGLKEVKC 168          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 QEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 276
            QEQP+ DKK F++ +K++IK LTP L  E+QE FK  IEGA K+LL K+ DLQFFVGESM DD  +VFAYYKEGATDPTFLYIA  LKEVKC
Sbjct:   77 QEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.885e-30
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 QEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 276
            QEQP FDKK FV+Y+K++IK LT  L  E+ + FKK +EGATKFLLSKL DLQFFVGESM DD  + FAYYK+GAT+ TFLY +  LKE+KC
Sbjct:   76 QEQPPFDKKSFVSYIKKYIKNLTAVLEPEKADEFKKGVEGATKFLLSKLKDLQFFVGESMKDDASVAFAYYKDGATNSTFLYFSHGLKEIKC 167          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP1_DICDI (Translationally-controlled tumor protein homolog 1 OS=Dictyostelium discoideum GN=DDB_G0282853 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    7 QPAFDKKQFVTYMKRFIKLLTPKLSEE---RQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 273
            + +FDKK +  Y+K ++K +  KL++    R + FKK+     K +L K  + +F+ GE+M  DG +   YYK G  DP FLY  D L+ VK
Sbjct:   82 ETSFDKKSYTGYIKAYMKEVLAKLADNNPSRVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVALMYYKPGEVDPIFLYFKDGLESVK 173          
BLAST of CX676112 vs. ExPASy Swiss-Prot
Match: TCTP_CRYNE (Translationally-controlled tumor protein homolog OS=Cryptococcus neoformans GN=CNM01460 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    4 EQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 273
            +  +FDKK ++TY+K ++K +  KL E   +R   F+K  +   K +++   D +F++GESM+ DG +    Y+E    P F    D LKE+K
Sbjct:   74 QSTSFDKKSYLTYLKGYMKAIKSKLQESNPDRVAAFEKGAQDFAKKIVANFKDYEFYIGESMNPDGMVCLLNYREDGVTPYFTMWKDGLKEIK 166          
The following BLAST results are available for this feature:
BLAST of CX676112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
TCTP_FRAAN2.531e-3681.52Translationally-controlled tumor protein homolog O... [more]
TCTP_TOBAC3.305e-3677.17Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH2.142e-3575.00Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU6.233e-3575.00Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL1.063e-3473.91Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT1.814e-3473.91Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME7.132e-3169.57Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE7.885e-3066.30Translationally-controlled tumor protein homolog O... [more]
TCTP1_DICDI1.951e-1238.04Translationally-controlled tumor protein homolog 1... [more]
TCTP_CRYNE2.818e-1134.41Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_67C01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67C01-E1-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676112 ID=CX676112; Name=CX676112; organism=Citrus sinensis; type=EST; length=474bp
CAGGAGCAACCTGCTTTTGACAAGAAGCAGTTTGTAACATACATGAAGAG
ATTCATCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATAT
TTAAGAAGAATATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGT
GACCTTCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGT
CTTTGCTTACTACAAGGAAGGTGCGACCGACCCAACATTTTTGTATATTG
CTGATGCATTGAAGGAGGTGAAGTGCTAAGCCGGGCTTCGAAGAGGAAGT
GCCTGCTGTAGTTCTAGTTTTAATTATTGCCCGCGGTTATTTTTATGTAT
CTTTTGTACTGGTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTA
TTTTGACATAAACAATATGTTTTTCTGCTCCTAATTATTGGGTTTTATGG
TTTGAGATTGAATTACCAAATAAA
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