FC921855

Overview
NameFC921855
Unique NameFC921855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921855 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.630e-32
Identity = 60/116 (51.72%), Postives = 85/116 (73.28%), Query Frame = 1
Query:   91 TENFPVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQ--TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 432
            T  FPVI++E + G ER A +E++++ACENWGFFE++NHGI  E MD VE++TK HY++  EQRF E  +    EG     +   +DWESTF+VRHLP+S I ++PDLD++YR++M
Sbjct:    4 TSTFPVINMELLAGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRLM 119          
BLAST of FC921855 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.722e-29
Identity = 57/116 (49.14%), Postives = 87/116 (75.00%), Query Frame = 1
Query:   88 DTENFPVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQ-TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 432
            ++ +FPVI++E + G++R A +  + +ACENWGFFEL+NHGI  E M+ VE + K HYR+  EQRFKE  AS+ L+ ++  + +++DWESTF++RHLP S I+++PDLD++ R  M
Sbjct:    2 ESGSFPVINMELLQGSQRPAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEF-ASKTLDSVENVDPDNLDWESTFFLRHLPTSNISQIPDLDDDCRATM 116          
BLAST of FC921855 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.304e-28
Identity = 56/116 (48.28%), Postives = 85/116 (73.28%), Query Frame = 1
Query:   88 DTENFPVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQT-EVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 432
            ++ +FPVI++E + G++R A +  + +ACENWG +EL+NHGI  E M+ VE + K HYR+  EQRFKE  AS+ L+ ++  E  ++DWESTF++RHLP S I+++PDLD++ R  M
Sbjct:    2 ESGSFPVINMELLQGSQRPAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEF-ASKTLDTVENVEPENLDWESTFFLRHLPTSNISQIPDLDDDCRSTM 116          
BLAST of FC921855 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.467e-22
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  115 LENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYR----KCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 432
            +E + G+ R+  +  + +ACENWGFFEL+NHGI  E  +  E + K HYR    +  EQRFKE  A     G   + +++DWESTF++RHLP S I++VPDLDE+    M
Sbjct:    1 MELLEGSRRSDAMAVLRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVDGDNLDWESTFFLRHLPTSNISQVPDLDEDCGSTM 110          
BLAST of FC921855 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  103 PVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFK-----ELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDE---EYRK 426
            PVI    ++G ERA  + +I   CE WGFF+LVNHGI  E ++ V++++   Y K  E+RF+     +L+ +   EG    ++++DWE  F ++   +   N  PD +E   EYR+
Sbjct:    4 PVIDFSKLDGKERAETMARIANGCEEWGFFQLVNHGIPVELLERVKKVSSECY-KLREERFEGSKPVQLLDTLVKEGDGQRLDNVDWEDVFVLQDDNEWPSNP-PDFEETMKEYRE 117          
The following BLAST results are available for this feature:
BLAST of FC921855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO1_ORYSI2.630e-3251.721-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO2_DORSP2.722e-2949.141-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_DORSP2.304e-2848.281-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO_DENCR2.467e-2245.451-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_MUSAC2.315e-1235.341-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]

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Properties
Property NameValue
Genbank descriptionC06053B10T7 RindPdigS Citrus sinensis cDNA clone C06053B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921855 ID=FC921855; Name=FC921855; organism=Citrus sinensis; type=EST; length=512bp
CGCGGGGGCACTAATTAACAAGCTCACAAACACATACACAAACACAAACA
CTCACAAACACACAGCTTGTTAAAGAAAGAATTCAGAGATACGGAGAACT
TCCCCGTTATCAGCTTGGAGAACATCAATGGTGCTGAAAGAGCGGCTATC
TTGGAGAAGATCAACGAGGCCTGTGAGAACTGGGGCTTCTTTGAGCTGGT
GAATCATGGAATTGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCA
AGGCGCATTACAGAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCA
AGCAGGGCACTTGAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGA
AAGCACTTTCTATGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCC
CAGATCTTGATGAGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAA
TTGGAGAAATTAGCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGG
ATTAGAGAAGGG
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