CN189212

Overview
NameCN189212
Unique NameCN189212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.873e-67
Identity = 119/134 (88.81%), Postives = 128/134 (95.52%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITE+AG V+SFDPKPI GDWNGAGAH+NYSTKSMR +GG +VIKKAIEKLG RH EHIAAYG+GNERRLTGRHETADINTFSWGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  223 RITELAGAVVSFDPKPIPGDWNGAGAHSNYSTKSMREEGGYEVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.873e-67
Identity = 121/134 (90.30%), Postives = 128/134 (95.52%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITE+AGVVL+FDPKPIKGDWNGAGAH NYSTKSMR DGG ++IKKAIEKLGKR  EHI+AYGEGNERRLTG+HETADINTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL KP
Sbjct:  222 RITEVAGVVLTFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGKRLPEHISAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILLKP 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.058e-67
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG +VIK AI+KLGK+H EHIAAYGEGNERRLTGRHETADINTF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  222 RITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKAAIDKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.127e-66
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            RITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG +VIKKAIEKLGKRH EHIAAYGEGNERRLTGRHETADI+TF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+L
Sbjct:  223 RITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIEKLGKRHNEHIAAYGEGNERRLTGRHETADISTFFWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLL 353          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.472e-66
Identity = 119/134 (88.81%), Postives = 126/134 (94.03%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITE AGVVLSFDPKPI+GDWNGAG H NYSTKSMR +GG +VIKKAIEKL  RH EHI+AYGEGNERRLTGRHETAD+NTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  224 RITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.472e-66
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG ++IKKAI+KLG RH EHIAAYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  223 RITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.922e-66
Identity = 120/133 (90.23%), Postives = 127/133 (95.49%), Query Frame = -3
Query:  225 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 623
            RITEIAGVV+SFDPKPI GDWNGAGAHAN+STKSMR +GG +VIKKAIEKLG RH EHIAAYGEGNERRLTG+HETADIN FSWGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  223 RITEIAGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 1.922e-66
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG ++IKKAIEKLG RH EHI+AYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  223 RITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEIIKKAIEKLGLRHKEHISAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 2.510e-66
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = -3
Query:  225 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 623
            RITE+AG+VLS DPKPIKGDWNGAGAH NYSTKSMR  GG +VIK+AIEKLG+RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIA+TTILWK
Sbjct:  223 RITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWK 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.279e-66
Identity = 117/134 (87.31%), Postives = 126/134 (94.03%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMRNDGG ++IK AIEKL  RH EHI+AYGEGNERRLTGRHETADINTFSWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPY+VTSMIAETTI+WKP
Sbjct:  223 RITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYIVTSMIAETTIIWKP 356          
The following BLAST results are available for this feature:
BLAST of CN189212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_PHAVU3.873e-6788.81Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA1_PEA3.873e-6790.30Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLNA1_SOYBN5.058e-6789.55Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA_LUPLU1.127e-6693.13Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA_PINSY1.472e-6688.81Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLN11_ARATH1.472e-6688.81Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA3_PEA1.922e-6690.23Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLN12_ARATH1.922e-6688.81Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA5_MAIZE2.510e-6689.47Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLN11_ORYSJ3.279e-6687.31Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189212 ID=CN189212; Name=CN189212; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTAGTAATCACAACTGAGCATCCCAAACAATGAAG
TACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCAAACA
ACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTTTTGT
GGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGTCATC
CATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCAGCGA
TCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCTGTCT
TCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAATGGA
GGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCAGTTT
CATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGCAATG
TGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCACATC
AATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGTGCAC
CAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAGAACA
ACTCCGGCAATTTCAGTAATCCTCT
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