CN189212

Overview
NameCN189212
Unique NameCN189212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.282e-66
Identity = 119/133 (89.47%), Postives = 127/133 (95.49%), Query Frame = -3
Query:  225 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 623
            RITEI+GVV+SFDPKPI GDWNGAGAHAN+STKSMR +GG +VIKKAIEKLG RH EHIAAYGEGNERRLTG+HETADIN FSWGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  223 RITEISGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 7.304e-66
Identity = 120/132 (90.91%), Postives = 124/132 (93.94%), Query Frame = -3
Query:  228 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 623
            RITEI GVV+SFDPKPI GDWNGAGAH NYSTK+MR +GG +VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  223 RITEIYGVVVSFDPKPIPGDWNGAGAHTNYSTKTMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.540e-66
Identity = 119/134 (88.81%), Postives = 124/134 (92.54%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITE+AGVVLS DPKPI GDWNGAGAH NYSTKSMR DGG +VIKKAIEKLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTE+ GKGYFEDRRPASNMDPY VTSMIAE+TILWKP
Sbjct:  223 RITELAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFLWGVANRGASIRVGRDTEQAGKGYFEDRRPASNMDPYTVTSMIAESTILWKP 356          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.627e-65
Identity = 118/132 (89.39%), Postives = 123/132 (93.18%), Query Frame = -3
Query:  228 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 623
            RITE+AG+VLS DPKPIKGDWNGAGAH NYSTKSMR  GG +VIK AI+KLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTE+EGKGYFEDRRPASNMDPYVVT MIAETTILW
Sbjct:  223 RITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKAAIDKLGKRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYVVTGMIAETTILW 354          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.125e-65
Identity = 116/134 (86.57%), Postives = 127/134 (94.78%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR++GG +VIKKAI+KLG RH EHIAAYG+GNERRLTGRHETADIN F WGVANRGAS+RVGRDTEK+GKGYFEDRRPASNMDPY+VT+MIAETTILW+P
Sbjct:  225 RITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHETADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEP 358          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.055e-64
Identity = 117/138 (84.78%), Postives = 126/138 (91.30%), Query Frame = -3
Query:  210 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP*KTN 623
            RITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR+DGG +VIKKAI KLG RH EHIAAYG+GNER LTGRHETADINTF WGV NRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVT +IAETT+LW+P  +N
Sbjct:  222 RITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRSDGGYEVIKKAIGKLGLRHREHIAAYGDGNERPLTGRHETADINTFVWGVPNRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTCLIAETTMLWEPSHSN 359          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.378e-64
Identity = 116/133 (87.22%), Postives = 122/133 (91.73%), Query Frame = -3
Query:  225 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 623
            R+TE+AGVVLS DPKPI GDWNGAGAH N+STKSMR  GG +VIKKAI+KL  RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIAETT+LWK
Sbjct:  223 RVTEVAGVVLSLDPKPIPGDWNGAGAHTNFSTKSMREPGGYEVIKKAIDKLALRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIAETTLLWK 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.350e-64
Identity = 115/131 (87.79%), Postives = 125/131 (95.42%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            RITEI+GV++SFDPKP+ GDWNGAGAH NYSTK+MRNDGG++VIKKAI KL  +H EHIAAYGEGNERRLTG+HETADINTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL
Sbjct:  223 RITEISGVIVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGGLEVIKKAIGKLQLKHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 353          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.523e-63
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG +VIK AIEKL  RH EHIAAYGEGN+ RLTGRHETADINTFSWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct:  223 RITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHREHIAAYGEGNDGRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIIWKP 356          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.788e-63
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITEIAGVV++FDPKPI GDWNGAGAH NYST+SMRNDGG  VI  A+EKL  +H EHIAAYGEGNERRLTG+HETADINT SWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  223 RITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRNDGGFKVIVDAVEKLKLKHKEHIAAYGEGNERRLTGKHETADINTSSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAQTTILWKP 356          
The following BLAST results are available for this feature:
BLAST of CN189212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA4_PEA4.282e-6689.47Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA_LACSA7.304e-6690.91Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLN14_ARATH9.540e-6688.81Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLNA1_MAIZE1.627e-6589.39Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLN13_ORYSJ2.125e-6586.57Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLNA2_MAIZE1.055e-6484.78Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLN12_ORYSJ1.378e-6487.22Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLN13_ARATH2.350e-6487.79Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA3_MAIZE1.523e-6385.07Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA3_HORVU5.788e-6384.33Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189212 ID=CN189212; Name=CN189212; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTAGTAATCACAACTGAGCATCCCAAACAATGAAG
TACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCAAACA
ACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTTTTGT
GGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGTCATC
CATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCAGCGA
TCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCTGTCT
TCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAATGGA
GGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCAGTTT
CATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGCAATG
TGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCACATC
AATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGTGCAC
CAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAGAACA
ACTCCGGCAATTTCAGTAATCCTCT
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