CN189212

Overview
NameCN189212
Unique NameCN189212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.292e-58
Identity = 106/134 (79.10%), Postives = 116/134 (86.57%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGG +VIKKAI  L  RH  HI+AYGEGNERRLTG HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPYVVT+++AETTILW+P
Sbjct:  279 RITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEP 412          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.631e-57
Identity = 106/134 (79.10%), Postives = 114/134 (85.07%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITE AGVVL+ DPKPI+GDWNGAG H NYST SMR DGG DVIKKAI  L  RH  HIAAYGEGNERRLTG HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY VT+++AETTILW+P
Sbjct:  285 RITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYTVTALLAETTILWEP 418          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.130e-57
Identity = 103/134 (76.87%), Postives = 115/134 (85.82%), Query Frame = -3
Query:  222 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 623
            RITE AGVVL+ DPKPI+GDWNGAG H NYSTK+MR DGG + IK+AI  L  RH  HI+AYGEGNERRLTG+HETA I TFSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+VT ++AETTILW+P
Sbjct:  274 RITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTGLLAETTILWQP 407          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.097e-45
Identity = 91/133 (68.42%), Postives = 103/133 (77.44%), Query Frame = -3
Query:  225 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 623
            RI E  GV +SF PKP+KG+WNGAG H N+STK+MR  GG+  I+ AIEKL KRH EHIA YGE N+ RLTGRHET  I+ FS GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+IAETTIL K
Sbjct:  222 RIAEQWGVKVSFHPKPLKGEWNGAGCHTNFSTKAMREAGGMKFIEDAIEKLAKRHDEHIAVYGEDNDLRLTGRHETGHISNFSSGVANRGASIRVPRHVASQGYGYLEDRRPASNIDPYRVTSIIAETTILDK 354          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.432e-45
Identity = 91/133 (68.42%), Postives = 101/133 (75.94%), Query Frame = -3
Query:  225 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 623
            R+ E  GV +SF PKP++GDWNGAGAH NYST +MR  GG+  I+ AIEKL KRH EHIA YGE NE RLTGRHET  I TFS GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETTIL K
Sbjct:  222 RVAEQWGVKVSFHPKPLQGDWNGAGAHTNYSTLAMREPGGMKYIEAAIEKLAKRHDEHIAVYGEDNEMRLTGRHETGHIGTFSSGVANRGASIRVPRHVANKGYGYLEDRRPASNIDPYRVTGIIIETTILDK 354          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.443e-45
Identity = 89/131 (67.94%), Postives = 101/131 (77.10%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            RI E   V +SF PKP++GDWNGAG H NYSTK+MR  GG+ VI++AIEKL KRH EHIA YGE N+ RLTGRHET  I  FS GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+I ETT+L
Sbjct:  222 RIAEQWAVKVSFHPKPLQGDWNGAGCHTNYSTKAMREPGGMKVIEEAIEKLSKRHDEHIAVYGEDNDLRLTGRHETGHIGAFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTSIIVETTLL 352          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.212e-44
Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  GV +SFDPKPIKGDWNGAG H N ST S R +GGI  I+  ++KL  RH EHIA YGEGNE RLTGRHET +I+ FS+GVA+RG SIR+ R   K+GKGYFEDRRPASN DPY +T +IAET
Sbjct:  212 RVAEEFGVKISFDPKPIKGDWNGAGLHTNVSTTSTRAEGGIKAIESYMKKLEARHVEHIAVYGEGNEERLTGRHETGNIDKFSYGVADRGGSIRIPRQVAKDGKGYFEDRRPASNADPYQITGIIAET 339          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.701e-44
Identity = 88/133 (66.17%), Postives = 98/133 (73.68%), Query Frame = -3
Query:  225 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 623
            RI E  G+ +SF PKP+ GDWNGAG H NYSTK MR  GG+  I +AIEKL KRH EHIA YGE N+ RLTGRHET  I  FS GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETT+L K
Sbjct:  222 RIAEQWGIKVSFHPKPLAGDWNGAGCHTNYSTKVMREPGGMKYIDEAIEKLSKRHAEHIAVYGEDNDLRLTGRHETGHIGDFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTGIIVETTVLDK 354          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.701e-44
Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  GV +SF PKP+KGDWNGAG H N STK MR  GG+  I++AIEKL KRH EHI  YG  NE+RLTGRHETA + +FS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  224 RVAEEFGVKISFHPKPLKGDWNGAGCHTNVSTKDMRVPGGMKYIEQAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMTSFSSGVANRGASIRIPRPVAKEGFGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.607e-44
Identity = 85/128 (66.41%), Postives = 98/128 (76.56%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  GV +S  PKP+KGDWNGAG H N STK MR  GG+  I+ AIEKL KRH EHI  YG  NE+RLTGRHETA ++TFS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  226 RVAEEFGVKVSLHPKPLKGDWNGAGCHTNVSTKLMRAPGGMKYIEDAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMSTFSSGVANRGASIRIPRSVNKEGYGYFEDRRPASNIDPYLVTGIMCET 353          
The following BLAST results are available for this feature:
BLAST of CN189212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_ORYSJ4.292e-5879.10Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA2_HORVU1.631e-5779.10Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_MAIZE2.130e-5776.87Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA_AGABI1.097e-4568.42Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_AMAMU1.432e-4568.42Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_HEBCY2.443e-4567.94Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_EMENI1.212e-4466.41Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_SUIBO2.701e-4466.17Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_CANGA2.701e-4466.41Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_KLULA4.607e-4466.41Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001H23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189212 ID=CN189212; Name=CN189212; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTAGTAATCACAACTGAGCATCCCAAACAATGAAG
TACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCAAACA
ACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTTTTGT
GGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGTCATC
CATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCAGCGA
TCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCTGTCT
TCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAATGGA
GGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCAGTTT
CATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGCAATG
TGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCACATC
AATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGTGCAC
CAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAGAACA
ACTCCGGCAATTTCAGTAATCCTCT
back to top