CN189212

Overview
NameCN189212
Unique NameCN189212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.607e-44
Identity = 85/128 (66.41%), Postives = 98/128 (76.56%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  GV +SF PKP+KGDWNGAG H N ST+ MR  GG+  I++AI+KL KRH EHI  YG  NE RLTGRHETA + TFS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT +I ET
Sbjct:  223 RVAEEFGVKVSFHPKPLKGDWNGAGCHTNVSTREMRQPGGMRYIEEAIDKLSKRHKEHIKLYGSDNELRLTGRHETASMATFSSGVANRGASIRIPRSVSKEGFGYFEDRRPASNIDPYLVTGIICET 350          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 7.859e-44
Identity = 82/128 (64.06%), Postives = 97/128 (75.78%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  G+ +SF PKP+KGDWNGAG H N STK MR  GG+  I++AIEKL KRH EHI  YG  N+ RLTGRHETA +  FS GVANRG+SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  224 RVAEEFGIKISFHPKPLKGDWNGAGCHTNVSTKEMRQPGGMKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.859e-44
Identity = 81/128 (63.28%), Postives = 102/128 (79.69%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R++E  G  +SFDPKPI GDWNGAG H N+ST++MR +GG+  I+ AI+KL  RH EHIA YGEGN++RLTGRHET  I++F++GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T +I ET
Sbjct:  228 RVSEEFGAKVSFDPKPIPGDWNGAGLHTNFSTENMRKEGGMKYIEDAIKKLEARHKEHIAVYGEGNDKRLTGRHETGSIDSFTYGVANRGASIRIPRECGAKGYGYFEDRRPASNADPYQITGIIMET 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.340e-43
Identity = 83/128 (64.84%), Postives = 97/128 (75.78%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  G+ +SF PKP++GDWNGAG H N STKSMR  GG+  I+ AIEKL  RH EHIA YGE N+ RLTGRHET  I +FS GVANRG SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  215 RVAEEFGIKISFHPKPLQGDWNGAGCHTNVSTKSMREPGGMKHIEAAIEKLAARHKEHIAVYGEDNDMRLTGRHETGSIGSFSSGVANRGCSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMTET 342          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.751e-43
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = -3
Query:  345 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASI 623
            RITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG +VIK+AIEKL KRH EHIAAYGEGNERRLTGRHETADI+TFSWGVANRGASI
Sbjct:  223 RITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKQAIEKLEKRHNEHIAAYGEGNERRLTGRHETADISTFSWGVANRGASI 315          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.135e-42
Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            RI E  G  +S DPKPI GDWNGAG H+N+STK MR +GG+  I+ AI+KL  RH EHIA YGEGNE+RLTGRHET  I+ FS+GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T ++ ET
Sbjct:  226 RIAEEFGAKVSVDPKPIPGDWNGAGLHSNFSTKEMRVEGGMKHIEAAIKKLEGRHKEHIAVYGEGNEKRLTGRHETGAIDQFSYGVANRGASIRIPREYTAKGYGYFEDRRPASNADPYRITGILMET 353          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.135e-42
Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRN-DGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E+  V +SFDPKPI GDWNG+G H NYSTK+ R    G  VI++   KL  RH  HIAAYGEGNERRLTG+HET+ ++ FSWGVANRG SIRVGR    E  GY+EDRRPASN+D YVVT +I ETTIL
Sbjct:  250 RVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRTAPDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVGRMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 381          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.312e-42
Identity = 81/128 (63.28%), Postives = 97/128 (75.78%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  GV +SF PKP+KG+WNGAG H N STKSMR  GG+  I+ A+ KL KRH EH+  YG  N++RLTGRHETA I  FS GVANRGAS+R+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  223 RVAEEFGVKVSFHPKPLKGEWNGAGCHTNVSTKSMRLPGGMKSIEVALSKLAKRHKEHMLLYGADNDQRLTGRHETASIEGFSSGVANRGASVRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMVET 350          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.607e-42
Identity = 78/131 (59.54%), Postives = 98/131 (74.81%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E+  V ++FDPKPI GDWNG+G H N+S +   +       + + +KLGKRH  HIAAYGEGNERRLTG+HET+ +N FSWGVANRG SIRVGR    E  GY+EDRRP+SN+DPYVVT ++ ETT+L
Sbjct:  104 RVAELFNVEVTFDPKPIPGDWNGSGGHVNFSNRQPESPPAGKQSRSSAKKLGKRHRWHIAAYGEGNERRLTGKHETSSMNDFSWGVANRGCSIRVGRMVPVEKCGYYEDRRPSSNLDPYVVTRLLVETTLL 234          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.255e-41
Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  GV +SF PKPI GDWNG+G H N ST++MR++GG+  I++AI+KL  RH EHIA YG+ N  RLTGRHET +I+ FS+GVA+RG+SIR+ R   KEGKGYFEDRRPASN  PY +T ++ ET
Sbjct:  226 RVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQAMRDEGGMKAIEEAIQKLSTRHAEHIAVYGDDNTLRLTGRHETGNIDAFSYGVADRGSSIRIPRSCAKEGKGYFEDRRPASNACPYQITGIMMET 353          
The following BLAST results are available for this feature:
BLAST of CN189212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_ASHGO4.607e-4466.41Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_YEAST7.859e-4464.06Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_NEUCR7.859e-4463.28Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_YARLI1.340e-4364.84Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA3_LUPAN1.751e-4390.32Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLNA_COLGL1.135e-4264.84Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA1_CHLRE1.135e-4264.39Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_DEBHA4.312e-4263.28Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_DUNSA9.607e-4259.54Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA_TUBBO1.255e-4160.94Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189212 ID=CN189212; Name=CN189212; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTAGTAATCACAACTGAGCATCCCAAACAATGAAG
TACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCAAACA
ACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTTTTGT
GGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGTCATC
CATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCAGCGA
TCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCTGTCT
TCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAATGGA
GGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCAGTTT
CATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGCAATG
TGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCACATC
AATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGTGCAC
CAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAGAACA
ACTCCGGCAATTTCAGTAATCCTCT
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