CN189212

Overview
NameCN189212
Unique NameCN189212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.639e-41
Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = -3
Query:  234 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 623
            RITE  G  +S  PKPI GDWNGAG H+N+STK+MR +GG+ VI++A++KL   H E IA YGE NE RLTGRHET  I++FSWGVANRG SIR  R+T  +G GYFEDRRPASN DPY VT  + + ++
Sbjct:  226 RITEEFGAKVSLHPKPIAGDWNGAGLHSNFSTKAMREEGGMKVIEEALKKLEPHHAECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRAPRETAAKGYGYFEDRRPASNADPYRVTKALLQFSL 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.140e-41
Identity = 83/135 (61.48%), Postives = 99/135 (73.33%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GVV + DPKP+ G+WNGAG H NYST+SMR +GG+  I+ AIEKLGKRH  HI  Y    G+ N RRLTG+HET+ I+ FS GVANRGASIR+ R   +EG GYFEDRRPA+N DPY VT  +  TTIL
Sbjct:  227 RVCEDFGVVATLDPKPMTGNWNGAGCHTNYSTESMRVEGGLKHIEDAIEKLGKRHDYHICVYDPRGGKDNSRRLTGQHETSSIHEFSAGVANRGASIRIPRQVGQEGYGYFEDRRPAANCDPYAVTEALVRTTIL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.140e-41
Identity = 83/132 (62.88%), Postives = 100/132 (75.76%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDG-GIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            RI E  G+  S  PKP+KGDWNGAG H+NYSTK MR  G G+  I+ AI+KL K+H EHIA YGE N+ RLTG+HETA + TFS GVANRGASIR+ R    +G GY EDRRPASN+DPY VT+++ ETT+L
Sbjct:  225 RIGEEWGITPSLHPKPLKGDWNGAGCHSNYSTKDMRTPGKGMAAIEDAIKKLEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVANRGASIRIPRHVGAQGYGYLEDRRPASNVDPYRVTAILVETTVL 356          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.140e-41
Identity = 83/135 (61.48%), Postives = 97/135 (71.85%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            RI E  GVV++FDPKP++G WNGAGAH N+STK MR DGGI  I++AIEKL KRH  HI AY    G+ NERRL GR ET+ I+ FSWGVANR  S+RV R     GKGY EDRRP+SN DPY V + I  T +L
Sbjct:  263 RIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRADGGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSWGVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLL 397          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.132e-41
Identity = 80/135 (59.26%), Postives = 99/135 (73.33%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  G++ SFDPKPI G+WNGAG H N+STK+MR+DGG+  I+ +IEKLGKRH  HI AY    G  N R LTG HET++IN FS GVANRGASIR+ R   ++ KGYFEDRRP++N DPY VT  +  T +L
Sbjct:  256 RVCEDFGIIASFDPKPIPGNWNGAGCHTNFSTKAMRDDGGLKYIEDSIEKLGKRHQYHIRAYDPKGGLDNARALTGHHETSNINEFSAGVANRGASIRIPRSVGQDKKGYFEDRRPSANCDPYAVTEALVRTCLL 390          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.387e-40
Identity = 78/128 (60.94%), Postives = 94/128 (73.44%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            RI E  GV +SF PKPI GDWNGAG H N STK  R +GGI  I+  +EK  KRH EHIA YG+ N+ RLTGRHET  I+ F++GVA+RGAS+R+ R     G GYFEDRRPAS++DPY+VT +I ET
Sbjct:  228 RIAEDFGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVYGDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLVTGIITET 355          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 5.271e-40
Identity = 82/135 (60.74%), Postives = 95/135 (70.37%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            RI+E  G+V + DPKP+ GDWNGAGAH N STK+MR DGGI  I+KA+ KL K H  HI AY    G+ N RRLTG+HET+ IN FS GVANRG SIR+ R    +GKGYFEDRRP+SN DPY V   I  T  L
Sbjct:  233 RISEEFGIVSTLDPKPMPGDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQDNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSSNCDPYSVVEAILRTICL 367          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.991e-40
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV++SFDPKPI G+WNGAG H N+STK+MR DGG+  I++AIEKL KRH  HI AY    G  N RRLTG HET+ I+ FS GVANRGASIR+ R+   E KGYFEDR P++N DPY VT  +  T +L
Sbjct:  227 RVCEDFGVIVSFDPKPIPGNWNGAGCHTNFSTKNMREDGGLKHIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSSIHEFSAGVANRGASIRIPRNVGHEKKGYFEDRGPSANCDPYAVTEALVRTCLL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 162.925 bits (411), Expect = 1.174e-39
Identity = 80/135 (59.26%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AI+KL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  227 RVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.616e-39
Identity = 79/135 (58.52%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AI+KL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E +GYFEDRRP++N DPY VT  I  T +L
Sbjct:  227 RVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKRGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
The following BLAST results are available for this feature:
BLAST of CN189212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_FUSSH1.639e-4161.54Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_XENLA2.140e-4161.48Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_CRYNE2.140e-4162.88Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA1_DROME2.140e-4161.48Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_SQUAC8.132e-4159.26Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_SCHPO1.387e-4060.94Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA2_DROME5.271e-4060.74Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_CHICK8.991e-4060.00Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_MOUSE1.174e-3959.26Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_ACOCA2.616e-3958.52Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189212 ID=CN189212; Name=CN189212; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTAGTAATCACAACTGAGCATCCCAAACAATGAAG
TACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCAAACA
ACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTTTTGT
GGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGTCATC
CATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCAGCGA
TCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCTGTCT
TCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAATGGA
GGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCAGTTT
CATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGCAATG
TGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCACATC
AATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGTGCAC
CAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAGAACA
ACTCCGGCAATTTCAGTAATCCTCT
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