CN189212

Overview
NameCN189212
Unique NameCN189212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.417e-39
Identity = 78/127 (61.42%), Postives = 96/127 (75.59%), Query Frame = -3
Query:  243 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE 623
            R+ E  G  +S  PKPI GDWNG G H+N+STK+MR +GG+ VI++A++KL   H E IA YGE NE RLTGRHET  I++FSWGVANRG SIRV R+T  +G GYFEDRRPASN DPY VT ++ +
Sbjct:  224 RVAEEFGAKVSLHPKPIAGDWNG-GLHSNFSTKAMREEGGMKVIEEALKKLEPHHVECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRVPRETAAKGYGYFEDRRPASNADPYRVTKVLLQ 349          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 161.384 bits (407), Expect = 3.417e-39
Identity = 79/135 (58.52%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  227 RVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 5.828e-39
Identity = 79/135 (58.52%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  227 RVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNTRRLTGFHETSNINDFSAGVANRGASIRIPRTGGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.298e-38
Identity = 79/135 (58.52%), Postives = 97/135 (71.85%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AI+KL KRH  HI AY    G  N RRLTG HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  227 RVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLRCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRIVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.298e-38
Identity = 78/135 (57.78%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I+++IEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  227 RVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.298e-38
Identity = 75/131 (57.25%), Postives = 97/131 (74.05%), Query Frame = -3
Query:  234 RITEIAGVVLSFDPKPIK-GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 623
            R+ E  G+V +F+PKP++ GDWNG GAH N+STK MR  GG+ VI++A+EKL K H EHI  YG GNE RLTG+HET DINTF  GVA+RG+SIR+      +G GY EDRRPA+N+DPY V  ++ +T +
Sbjct:  248 RLGEDFGIVSTFNPKPVRTGDWNGTGAHTNFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADRGSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVL 378          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.892e-38
Identity = 78/135 (57.78%), Postives = 97/135 (71.85%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  228 RVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 362          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 158.303 bits (399), Expect = 2.892e-38
Identity = 78/135 (57.78%), Postives = 97/135 (71.85%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G+  I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANR ASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  227 RVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-36
Identity = 68/128 (53.12%), Postives = 95/128 (74.22%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            +I+E     + + PKP++GDWNG+G H N+ST+SMR++GG+ VI +A++KL  +H EH+  YG  N+ RLTG HETA I+ FS G+ +R  S+R+  DT K G GYFEDRRPA+N+DPY VTS+I +T
Sbjct:  221 KISEHYDRYIVYHPKPLQGDWNGSGCHTNFSTESMRSEGGLTVIMEAVDKLRTKHSEHMKVYGIDNDLRLTGDHETASIDEFSHGIGSRQCSVRIPNDTVKNGYGYFEDRRPAANIDPYQVTSIILQT 348          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.031e-36
Identity = 76/135 (56.30%), Postives = 94/135 (69.63%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ E   VV++ DPKPI GDWNGAG H N+ST++MR   GI  I+ AI+KL K H +HI AY    G+ NERRLTG +ET+ I+ FS GVANRGASIR+ R   +E  GY EDRRP+SN DPYVV+  +  T  L
Sbjct:  224 RVAEDFDVVVTLDPKPIPGDWNGAGMHTNFSTEAMRGPNGILEIESAIDKLSKVHEKHIKAYDPHAGKDNERRLTGHYETSSIHDFSAGVANRGASIRIPRGVAEEKTGYLEDRRPSSNADPYVVSERLVRTICL 358          
The following BLAST results are available for this feature:
BLAST of CN189212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_GIBFU3.417e-3961.42Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_BOVIN3.417e-3958.52Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_PIG5.828e-3958.52Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_RAT1.298e-3858.52Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_CANFA1.298e-3857.78Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA2_CHLRE1.298e-3857.25Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA_MACFA2.892e-3857.78Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_HUMAN2.892e-3857.78Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_MIMIV2.073e-3653.13Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_PANAR6.031e-3656.30Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189212 ID=CN189212; Name=CN189212; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTAGTAATCACAACTGAGCATCCCAAACAATGAAG
TACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCAAACA
ACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTTTTGT
GGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGTCATC
CATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCAGCGA
TCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCTGTCT
TCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAATGGA
GGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCAGTTT
CATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGCAATG
TGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCACATC
AATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGTGCAC
CAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAGAACA
ACTCCGGCAATTTCAGTAATCCTCT
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