CN189212

Overview
NameCN189212
Unique NameCN189212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 146.747 bits (369), Expect = 8.709e-35
Identity = 74/135 (54.81%), Postives = 94/135 (69.63%), Query Frame = -3
Query:  231 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 623
            R+ +  GV+ +FD KPI G+WNGAG H N+STK+MR + G+  IK+AIEKL KRH  HI AY    G  N RRLTG H+T++IN FS GVA+R ASIR+ R   +E KGYFE R P++N DP+ VT  I  T +L
Sbjct:  227 RVCKDFGVIATFDSKPIPGNWNGAGCHTNFSTKTMREENGLKHIKEAIEKLSKRHRYHIRAYDPKGGLDNARRLTGFHKTSNINDFSAGVADRSASIRIPRTVGQEKKGYFEARCPSANCDPFAVTEAIVRTCLL 361          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.534e-34
Identity = 75/136 (55.15%), Postives = 90/136 (66.18%), Query Frame = -3
Query:  234 RITEIAGVVLSFDPKP--IKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 623
            R+ E  GV +S DPKP    GDWNGAG H N+ST  MR  GGI  I+ A+  L + H E +  Y    GE N RRLTGRHET+  + FSWGVANRG SIR+ R    E KGY EDRRP+SN DPY VT+MIA++ +
Sbjct:  231 RVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDPYQVTAMIAQSIL 366          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            RI E  GV +SF  KPI GDWNGAGAH N+STK      G D I    E LG R  EH+  YG+G E RLTG+HETA  N +SWG ++RGAS+R+    EK  KG+ EDRRP +NMDPY+VT+++ +T
Sbjct:  200 RIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTKQTME--GWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETAPWNKYSWGASDRGASVRIPWAVEKAKKGWLEDRRPNANMDPYLVTALMIDT 325          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 69/130 (53.08%), Postives = 90/130 (69.23%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGK--RHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R  E   V  + DPKP+KGDWNGAGAH N+STK+MR     D I  A E LG+  +  +H+  YG G + RLTG HETA  N +S+GV++RGAS+R+    EK+GKGY EDRRP +N+DPYVVT ++ +T
Sbjct:  205 RTAEDFDVAATLDPKPVKGDWNGAGAHTNFSTKAMRES--YDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETAPWNEYSYGVSDRGASVRIPWQVEKDGKGYIEDRRPNANVDPYVVTRLLVDT 332          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 69/130 (53.08%), Postives = 88/130 (67.69%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGK--RHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 623
            R+ E  GV  S D KP KGDWNGAGAH N+ST++MR   G D I  A E LG+  +  EH+  YG G E RLTG HETA  + +S+G ++RGAS+R+    E E KGY EDRRP +N+DPYVVT ++ +T
Sbjct:  202 RVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMRE--GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAYSYGASDRGASVRIPWQVEVEKKGYIEDRRPNANVDPYVVTRLMVDT 329          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = -3
Query:  240 RITEIAGVVLSFDPKPIKG-DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEG-KGYFEDRRPASNMDPYVVTSMIAET 623
            R+TE  G+ + F  KP+   DWNG+G HAN+ST+ MR  GG +  +  +    K   +HIA YG  N++RLTG+HETA  N FS+GVA+RGASIRV       G KGY EDRRP S  DPY + S I +T
Sbjct:  203 RLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGGKEYFEALMAAFDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFVNNGYKGYLEDRRPNSQGDPYQIASQILKT 332          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = -3
Query:  261 RITEIAGVVLSFDPKPIKG-DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPYVV 623
            R+TE  G+ + +  KP+   DWNG+G H N+STK +R  GG +  +  +    K   +HIA YG  N++RLTG+HETA  N FS+GVA+RGASIRV     + + KGY EDRRP S  DPY +
Sbjct:  200 RLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFIKNDYKGYLEDRRPNSQGDPYQI 322          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.442e-21
Identity = 57/121 (47.11%), Postives = 71/121 (58.68%), Query Frame = -3
Query:  267 RITEIAGVVLSFDPKPIKG-DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPY 623
            R+TE  G+ + F  KP+   DWNG+G HAN+ST  +R  GG D  +  +    K   +HI  YG  N  RLTG+HETA  + FS+GVA+RGASIRV          GY EDRR  S  DPY
Sbjct:  203 RLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGGQDYFEALMAAFEKNLHDHINVYGPDNHLRLTGKHETAPWDKFSYGVADRGASIRVPHSFVNNAYPGYLEDRRANSQGDPY 323          
BLAST of CN189212 vs. ExPASy Swiss-Prot
Match: GLNA_VITSX (Glutamine synthetase (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  357 RNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANR 518
            +NDGG +VIKK        H EHIAAYGEGNER     HETADINTF WGVANR
Sbjct:   11 KNDGGFEVIKK--------HKEHIAAYGEGNER-----HETADINTFLWGVANR 51          
The following BLAST results are available for this feature:
BLAST of CN189212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_CRIGR8.709e-3554.81Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA_CAEEL2.534e-3455.15Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA2_FRAAL6.241e-3354.69Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_STRVR1.390e-3253.08Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY2.622e-3153.08Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_BRAJA1.031e-2750.00Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP4.790e-2547.97Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME1.442e-2147.11Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]
GLNA_VITSX3.937e-1166.67Glutamine synthetase (Fragments) OS=Vitis sp. PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189212 ID=CN189212; Name=CN189212; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTTTTTTTAGTAATCACAACTGAGCATCCCAAACAATGAAG
TACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCAAACA
ACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTTTTGT
GGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGTCATC
CATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCAGCGA
TCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCTGTCT
TCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAATGGA
GGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCAGTTT
CATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGCAATG
TGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCACATC
AATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGTGCAC
CAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAGAACA
ACTCCGGCAATTTCAGTAATCCTCT
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