CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SYNR3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain RCC307) GN=pgk PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.654e-40
Identity = 83/112 (74.11%), Postives = 92/112 (82.14%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AIP+GWMGLD+G D+IK F +AL   KT+IWNG MGVFE+ KFAAG+ AIA  LAELS KG  TIIGGGDSVAAVEK GLA +MSHISTGGGASLELLEGK L GV A D+A
Sbjct:  290 AIPEGWMGLDIGPDSIKVFQDALGDCKTVIWNGPMGVFEFDKFAAGTNAIATTLAELSAKGCCTIIGGGDSVAAVEKAGLAAQMSHISTGGGASLELLEGKVLPGVAALDEA 401          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SYNY3 (Phosphoglycerate kinase OS=Synechocystis sp. (strain PCC 6803) GN=pgk PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            AIPDGWMGLD+G D++K+F +AL    T+IWNG MGVFE+ KFA G+EAIA  LAEL+  G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK L G+ A DD
Sbjct:  290 AIPDGWMGLDIGPDSVKTFQDALAGCGTVIWNGPMGVFEFDKFAVGTEAIACSLAELTASGTVTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDD 400          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SYNE7 (Phosphoglycerate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=pgk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 80/112 (71.43%), Postives = 94/112 (83.93%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AIPDGWMGLD+G +++K F EAL   +++IWNG MGVFE+ +FA G+EAIA+ LA L+ KG TTIIGGGDSVAAVEKVG+A +MSHISTGGGASLELLEGK L GV A DDA
Sbjct:  290 AIPDGWMGLDIGPESVKQFEEALADCRSVIWNGPMGVFEFDQFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVASEMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_MICAN (Phosphoglycerate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=pgk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 78/111 (70.27%), Postives = 94/111 (84.68%), Query Frame = -2
Query:  321 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 653
            IPDGWMGLD+G +++K F EAL   K+++WNG MGVFE+ KFAAG++AIA  LA+L+  G TTIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK L G+ A D+A
Sbjct:  292 IPDGWMGLDIGPESVKVFQEALSNCKSVLWNGPMGVFEFDKFAAGTDAIAHTLADLTATGTTTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDEA 402          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CYAP8 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 8801) GN=pgk PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.009e-39
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            AI DGWMGLD+G +++K F  AL   K++IWNG MGVFE+ KFA G+EAIA  LAEL+GKG  TIIGGGDSVAAVEKVG+ADKMSHISTGGGASLELLEGK L G+ A D+
Sbjct:  289 AIEDGWMGLDIGPESVKVFQAALADCKSVIWNGPMGVFEFDKFAKGTEAIAHTLAELTGKGTITIIGGGDSVAAVEKVGVADKMSHISTGGGASLELLEGKVLPGIAALDE 399          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SYNP6 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.247e-39
Identity = 79/112 (70.54%), Postives = 93/112 (83.04%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AIPDGWMGLD+G +++K F  AL   +++IWNG MGVFE+ +FA G+EAIA+ LA L+ KG TTIIGGGDSVAAVEKVG+A +MSHISTGGGASLELLEGK L GV A DDA
Sbjct:  290 AIPDGWMGLDIGPESVKQFEGALADCRSVIWNGPMGVFEFDQFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVASEMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.832e-39
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            AIPDGWMGLD+G D+IK+F +AL   KT++WNG MGVFE+ KFA G+ AIA  L+EL+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK L GV A D+
Sbjct:  351 AIPDGWMGLDIGPDSIKTFQDALADAKTVVWNGPMGVFEFPKFAVGTVAIANTLSELTPKGAITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 461          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.005e-39
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            +IP+GWMGLD+G++++K F +AL   KT+IWNG MGVFE+ KFA G+ +I+  LAELS KG  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK L GV A DD
Sbjct:  290 SIPEGWMGLDIGKESVKLFQDALADCKTVIWNGPMGVFEFDKFANGTNSISTTLAELSAKGCCTIIGGGDSVAAVEKAGLASKMSHISTGGGASLELLEGKVLPGVAALDD 400          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROM4 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=pgk PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            +IP+GWMGLD+G D++K F +AL+  +T+IWNG MGVFE+ KFA G+ +IA  L+ LS KG  TIIGGGDSVAAVEK GLADKMSHISTGGGASLELLEGKTL GV A D+
Sbjct:  290 SIPEGWMGLDIGPDSVKLFQDALEDCQTVIWNGPMGVFEFDKFANGTNSIATTLSVLSQKGCCTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVAALDE 400          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_ACAM1 (Phosphoglycerate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.115e-38
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = -2
Query:  321 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 653
            IPDGWMGLD+G +++K F  AL   KT+IWNG MGVFE+ KFAAG++A+A  LA ++  G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK L G+ A D+A
Sbjct:  291 IPDGWMGLDIGPNSVKEFQAALSDCKTVIWNGPMGVFEFDKFAAGTDAVAHSLAAITETGADTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDEA 401          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SYNR32.654e-4074.11Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNY33.466e-4072.07Phosphoglycerate kinase OS=Synechocystis sp. (stra... [more]
PGK_SYNE73.466e-4071.43Phosphoglycerate kinase OS=Synechococcus elongatus... [more]
PGK_MICAN3.466e-4070.27Phosphoglycerate kinase OS=Microcystis aeruginosa ... [more]
PGK_CYAP81.009e-3972.07Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_SYNP62.247e-3970.54Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGKH_VOLCA3.832e-3970.27Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGK_PROMA5.005e-3970.27Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM48.537e-3970.27Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ACAM11.115e-3868.47Phosphoglycerate kinase OS=Acaryochloris marina (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
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