CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SYNJA (Phosphoglycerate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 76/112 (67.86%), Postives = 93/112 (83.04%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AIP+ WMGLD+G +++K+F  AL   KT++WNG MGVFE+ +FAAG+EAIA+ LA+L+  G  TIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK L G+ A  +A
Sbjct:  301 AIPEDWMGLDIGPESVKAFQAALQGCKTVVWNGPMGVFEFDRFAAGTEAIARTLADLTQAGAITIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKELPGIAALSEA 412          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SYNJB (Phosphoglycerate kinase OS=Synechococcus sp. GN=pgk PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.244e-38
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AIP+ WMGLD+G +++K+F  AL   +T++WNG MGVFE+ +FA G+EAIA+ LA+L+  G TTIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK L G+ A  +A
Sbjct:  301 AIPEDWMGLDIGPESVKAFQSALQGCQTVVWNGPMGVFEFDRFALGTEAIARTLADLTQAGATTIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKVLPGIAALTEA 412          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROMT (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=pgk PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.244e-38
Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AI +GWMGLD+G ++++ F  AL   KT+IWNG MGVFE+ KFA G+ AIA  LAELS +G  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK L GV A DDA
Sbjct:  290 AISEGWMGLDIGSESVELFQNALKDCKTVIWNGPMGVFEFEKFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKKMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AI +GWMGLD+G ++++ F  AL   KT+IWNG MGVFE+ KFA G+ AIA  LAELS +G  TIIGGGDSVAAVEK GLA  MSHISTGGGASLELLEGK L GV A DDA
Sbjct:  290 AISEGWMGLDIGSESVELFQNALKDCKTVIWNGPMGVFEFEKFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKNMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROMS (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain AS9601) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 81/113 (71.68%), Postives = 88/113 (77.88%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AI   WMGLD+G D+IK F  AL   KTIIWNG MGVFE+ KFA G+ AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTL GV A +DA
Sbjct:  290 AISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROM2 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=pgk PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.765e-36
Identity = 80/113 (70.80%), Postives = 88/113 (77.88%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            +I   WMGLD+G D+IK F  AL   KTIIWNG MGVFE+ KFA G+ AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTL GV A +DA
Sbjct:  290 SISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFAEGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.765e-36
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = -2
Query:  324 TAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 659
            TAIPDGWMGLD+G D++K+F++AL   KT++WNG MGVFE+ +    + +IA  LA L+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK L GV A D+
Sbjct:  349 TAIPDGWMGLDIGPDSVKTFNDALADAKTVVWNGPMGVFEFPQVRQRTVSIANTLAGLTPKGCITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 460          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROM9 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=pgk PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.835e-36
Identity = 80/113 (70.80%), Postives = 88/113 (77.88%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            +I   WMGLD+G D+IK F  AL   KTIIWNG MGVFE+ KFA G+ AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTL GV A +DA
Sbjct:  290 SISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_TRIEI (Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            AIPDGWMGLD+G ++ K F +AL   KT+IWNG MGVFE  KFA G+EAIA+ LA+   +   TIIGGGDSVAAVE++GL +KMSHISTGGGASLELLEGK L G++A DD
Sbjct:  289 AIPDGWMGLDIGPESAKVFQDALADCKTVIWNGPMGVFEMEKFAKGTEAIAQTLADK--QDAITIIGGGDSVAAVEQLGLGEKMSHISTGGGASLELLEGKKLPGIVALDD 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 80/113 (70.80%), Postives = 86/113 (76.11%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            AI   WMGLD+G  +IK F  AL   KTIIWNG MGVFE+ KFA G+ AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTL GV A  DA
Sbjct:  290 AISGDWMGLDIGPQSIKVFQNALAECKTIIWNGPMGVFEFDKFAEGTNAIATTLADLSSFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALKDA 402          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SYNJA1.902e-3867.86Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNJB3.244e-3866.96Phosphoglycerate kinase OS=Synechococcus sp. GN=pg... [more]
PGK_PROMT3.244e-3870.54Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM11.233e-3769.64Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMS3.966e-3671.68Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM26.765e-3670.80Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGKH_CHLRE6.765e-3665.18Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_PROM98.835e-3670.80Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_TRIEI1.968e-3567.57Phosphoglycerate kinase OS=Trichodesmium erythraeu... [more]
PGK_PROMP3.357e-3570.80Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
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