CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_ACTP2 (Phosphoglycerate kinase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.336e-20
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = -2
Query:  339 DVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 629
            D+G  + +  +  + + KTI+WNG +GVFE+  F  G+E I+  +AE +  G  +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK L  V
Sbjct:  286 DIGDKSAEELANIIKSAKTILWNGPVGVFEFPNFRKGTEVISNAIAEATANGAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAV 382          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SHEDO (Phosphoglycerate kinase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            + D  M  D+G D+ ++ ++ ++T  TI+WNG +GVFE+ +F  G+E IA+ +A+       +I GGGD++AAV+K  +ADK+S+ISTGGGA LE LEGK L  V
Sbjct:  282 VSDTDMIFDIGPDSAEALAKIIETAGTIVWNGPVGVFEFDQFGKGTERIARAIADSKA---FSIAGGGDTLAAVDKYNIADKVSYISTGGGAFLEFLEGKELPAV 383          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SHEB8 (Phosphoglycerate kinase OS=Shewanella baltica (strain OS185) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 48/105 (45.71%), Postives = 74/105 (70.48%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            + D  M  D+G D+ ++ ++ +++  TI+WNG +GVFE+ +F  G++ IA+ +A+       +I GGGD++AAV+K G+ADK+S+ISTGGGA LE LEGK L  V
Sbjct:  282 VADSEMIFDIGPDSAEALAKIIESAGTIVWNGPVGVFEFDQFGEGTKRIAQAIADSKA---FSIAGGGDTLAAVDKYGIADKVSYISTGGGAFLEFLEGKELPAV 383          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_MYCH2 (Phosphoglycerate kinase OS=Mycoplasma hyopneumoniae (strain 232) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            IPD   G+D+G   I+ F + L   KTI+WNG +GV E+  FA G++ +AK +A L  K   +IIGGGDS+AA+E  GL++  SHISTGGGAS+  +E   L G+
Sbjct:  295 IPDHLEGMDIGPLTIELFKDHLKDGKTILWNGTLGVAEFKNFARGTKEVAKIIANL--KECYSIIGGGDSIAAIEAEGLSNSFSHISTGGGASISFIENGDLIGL 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CHLTA (Phosphoglycerate kinase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = -2
Query:  342 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHG 653
            IP+G  G D+G   I+ FS+ +  + TI WNG +GV+E   F  GS+AIA+ LA  S     T++GGGD+ A V   G A ++SH+STGGGASLE LE  +L G
Sbjct:  293 IPEGLAGFDIGAQTIELFSKVIQESATIFWNGPVGVYEVPPFDQGSKAIAQCLA--SHSSAVTVVGGGDAAAVVALAGCASQISHVSTGGGASLEFLEKSSLPG 394          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_BARBK (Phosphoglycerate kinase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  333 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLA 656
            AIPD  M LD+G  +I   +  +D + T++WNG +GVFE   F  G+ A+A+  A  S KG   +I GGGD+V A+   G+AD  +++ST GGA LE +EGKTL GVLA
Sbjct:  285 AIPDEGMILDIGEHSIARINTVIDASATLVWNGPLGVFEVSPFDHGTIAVARYAAARSQKGHCVSIAGGGDTVFALNHAGVADDFTYLSTAGGAFLEWMEGKTLPGVLA 393          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SHESW (Phosphoglycerate kinase OS=Shewanella sp. (strain W3-18-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.984e-20
Identity = 48/105 (45.71%), Postives = 74/105 (70.48%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            + D  M  D+G D+ ++ ++ +++  TI+WNG +GVFE+ +F  G++ IA+ +A+       +I GGGD++AAV+K G+ADK+S+ISTGGGA LE LEGK L  V
Sbjct:  282 VSDSDMIFDIGPDSAEALAKIIESAGTIVWNGPVGVFEFDQFGEGTKRIAQAIADSKA---FSIAGGGDTLAAVDKYGIADKVSYISTGGGAFLEFLEGKELPAV 383          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SHEPC (Phosphoglycerate kinase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.984e-20
Identity = 48/105 (45.71%), Postives = 74/105 (70.48%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            + D  M  D+G D+ ++ ++ +++  TI+WNG +GVFE+ +F  G++ IA+ +A+       +I GGGD++AAV+K G+ADK+S+ISTGGGA LE LEGK L  V
Sbjct:  282 VSDSDMIFDIGPDSAEALAKIIESAGTIVWNGPVGVFEFDQFGEGTKRIAQAIADSKA---FSIAGGGDTLAAVDKYGIADKVSYISTGGGAFLEFLEGKELPAV 383          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_HAHCH (Phosphoglycerate kinase OS=Hahella chejuensis (strain KCTC 2396) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.984e-20
Identity = 48/105 (45.71%), Postives = 74/105 (70.48%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            + D  M LD+G  +  + +E L + KTI+WNG +GVFE+ +F  G++ +A+ +AE       +I GGGD++AA++K G+++K+S+ISTGGGA LE +EGKTL  V
Sbjct:  278 VTDDDMILDIGPQSAAALAELLKSAKTILWNGPVGVFEFDQFGDGTKTLAQAIAE---SDAFSIAGGGDTLAAIDKYGVSEKISYISTGGGAFLEFVEGKTLPAV 379          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SYNFM (Phosphoglycerate kinase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=pgk PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.204e-20
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            +P   + LDVG  +I+ F   L   +TI+WNG +G FE   F  G+ A+A+ L  L      T+IGGGDS AAV++  + DK+S++STGGGA LE+LEG TL GV A ++
Sbjct:  286 VPKDRLILDVGSKSIEVFESVLKNCRTIVWNGPLGAFETPPFNKGTFALAEFLGSLDA---LTVIGGGDSAAAVKQANMEDKVSYVSTGGGAFLEMLEGITLPGVAALEE 392          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ACTP22.336e-2046.39Phosphoglycerate kinase OS=Actinobacillus pleuropn... [more]
PGK_SHEDO3.051e-2046.67Phosphoglycerate kinase OS=Shewanella denitrifican... [more]
PGK_SHEB83.051e-2045.71Phosphoglycerate kinase OS=Shewanella baltica (str... [more]
PGK_MYCH23.051e-2048.57Phosphoglycerate kinase OS=Mycoplasma hyopneumonia... [more]
PGK_CHLTA3.051e-2048.08Phosphoglycerate kinase OS=Chlamydia trachomatis (... [more]
PGK_BARBK3.051e-2047.71Phosphoglycerate kinase OS=Bartonella bacilliformi... [more]
PGK_SHESW3.984e-2045.71Phosphoglycerate kinase OS=Shewanella sp. (strain ... [more]
PGK_SHEPC3.984e-2045.71Phosphoglycerate kinase OS=Shewanella putrefaciens... [more]
PGK_HAHCH3.984e-2045.71Phosphoglycerate kinase OS=Hahella chejuensis (str... [more]
PGK_SYNFM5.204e-2046.36Phosphoglycerate kinase OS=Syntrophobacter fumarox... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
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