CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_MOOTA (Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.552e-31
Identity = 63/111 (56.76%), Postives = 85/111 (76.58%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            A+PDGWM LD+G +  ++++ AL+  +T++WNG MGVFE   FA G+EA+A+ +A + G    TI+GGGDSVAAVEK+G+A K+ HISTGGGASLE LEGK L GV+A  +
Sbjct:  285 AVPDGWMALDIGPETARAYAGALEGARTVVWNGPMGVFEMEAFAHGTEAVARAVAAVDGM---TIVGGGDSVAAVEKMGVAGKIGHISTGGGASLEFLEGKALPGVVALTE 392          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_THEP1 (Phosphoglycerate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pgk PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.557e-31
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IP+GWMGLD+G + ++ F + L   KT++WNG MGVFE   FA G++ +A  +A L+ KG  T++GGGDS AAV K GL D+ SH+STGGGASLE LEGK L G+ +  D
Sbjct:  287 IPEGWMGLDIGPETVELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDRFSHVSTGGGASLEFLEGKELPGIASIAD 396          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_DEIGD (Phosphoglycerate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=pgk PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.557e-31
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = -2
Query:  333 ATAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLA 662
            A  IPDGWMGLD+G +  ++++EAL   KT+ WNG MGVFE+  FAAG+ A+A+ +AEL G    T++GGGDSV+A+ + G A K+SHISTGGGASLELLEG+ L GV A
Sbjct:  279 ADRIPDGWMGLDIGPETARAYAEALQGAKTVFWNGPMGVFEFPAFAAGTNAVAQAVAEL-GNQAYTVVGGGDSVSAINQSGQASKVSHISTGGGASLELLEGQLLPGVEA 387          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_RHOSR (Phosphoglycerate kinase OS=Rhodococcus sp. (strain RHA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = -2
Query:  327 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLHGVLAFD 653
            IPDGWMGLD+G  +++ F+  L + KT+ WNG MGVFE+ KFAAG++ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK L G+   +
Sbjct:  293 IPDGWMGLDIGPQSVRRFAAILTSAKTVFWNGPMGVFEFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_RHOOB (Phosphoglycerate kinase OS=Rhodococcus opacus (strain B4) GN=pgk PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = -2
Query:  327 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLHGVLAFD 653
            IPDGWMGLD+G  +++ F+  L + KT+ WNG MGVFE+ KFAAG++ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK L G+   +
Sbjct:  293 IPDGWMGLDIGPQSVRRFAAILTSAKTVFWNGPMGVFEFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_DEIRA (Phosphoglycerate kinase OS=Deinococcus radiodurans GN=pgk PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.460e-30
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = -2
Query:  333 ATAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLA 662
            A  IPDGWMGLD+G D  +++++AL   KT+ WNG MGVFE+ +FAAG+ A+A  +  L  +   T++GGGDSV+A+ K G AD++ HISTGGGASLELLEGK L GV+A
Sbjct:  301 ADQIPDGWMGLDIGPDTQRAYADALQGAKTVFWNGPMGVFEFDQFAAGTNAVAAAVGSLKDQAY-TVVGGGDSVSAINKSGKADQIDHISTGGGASLELLEGKELPGVVA 409          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_ROSS1 (Phosphoglycerate kinase OS=Roseiflexus sp. (strain RS-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.490e-30
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = -2
Query:  321 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 653
            IP GW  LD+G + +++++E + T +T+IWNG MGVFE   FA G+ AIA+ +A   G    TI+GGGDSVAAVE++GLADK+ HISTGGGASLELLEG+ L GV A +DA
Sbjct:  288 IPPGWRVLDIGPETVRAYTEIITTAQTVIWNGPMGVFELAPFAEGTRAIAQAMANCPGM---TIVGGGDSVAAVEQMGLADKIRHISTGGGASLELLEGRILPGVAALNDA 395          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LACSS (Phosphoglycerate kinase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=pgk PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.490e-30
Identity = 66/110 (60.00%), Postives = 79/110 (71.82%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IPDG+M LD+G  AI  F   L   KT++WNG MGVFE   FA G+ AI + L  LSG   TTI+GGGDS AAV+K+G+ DK++HISTGGGASLE LEGKTL G+ A  D
Sbjct:  296 IPDGYMALDIGPKAIADFENVLKDAKTVVWNGPMGVFEMDNFAKGTLAIGEFLGNLSG--ATTIVGGGDSTAAVKKLGVGDKLTHISTGGGASLEYLEGKTLPGIAAISD 403          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_THEAB (Phosphoglycerate kinase OS=Thermosipho africanus (strain TCF52B) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.252e-30
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            +P+GWMGLD+G   ++ F  ++   KTI+WNG MGVFE   F+ G++ +A  +AE + KG TTIIGGGDS AA+ K GL DK+SH+STGGGASLE LEGK L G+
Sbjct:  287 LPEGWMGLDIGPKTVELFRNSISGAKTIVWNGPMGVFEIEDFSNGTKEVAIAIAEETSKGATTIIGGGDSAAAIAKFGLKDKVSHVSTGGGASLEFLEGKELPGI 391          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LEUCK (Phosphoglycerate kinase OS=Leuconostoc citreum (strain KM20) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.252e-30
Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = -2
Query:  324 ATA-IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 662
            ATA IPDG+MGLD+G  ++K   + L   KT++WNG MGVFE   FA G+ AI ++L +++  G TTI+GGGDS AAV+++G+ADK+SHISTGGGASLE LEGK L G+ +  +
Sbjct:  291 ATAGIPDGYMGLDIGPKSVKLLQDTLADAKTVVWNGPMGVFEMPNFAKGTLAIGEELVKVTENGGTTIVGGGDSTAAVQQLGVADKLSHISTGGGASLEYLEGKELPGIASISE 404          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_MOOTA6.552e-3156.76Phosphoglycerate kinase OS=Moorella thermoacetica ... [more]
PGK_THEP18.557e-3154.55Phosphoglycerate kinase OS=Thermotoga petrophila (... [more]
PGK_DEIGD8.557e-3159.09Phosphoglycerate kinase OS=Deinococcus geothermali... [more]
PGK_RHOSR1.118e-3055.45Phosphoglycerate kinase OS=Rhodococcus sp. (strain... [more]
PGK_RHOOB1.118e-3055.45Phosphoglycerate kinase OS=Rhodococcus opacus (str... [more]
PGK_DEIRA1.460e-3057.27Phosphoglycerate kinase OS=Deinococcus radiodurans... [more]
PGK_ROSS12.490e-3058.56Phosphoglycerate kinase OS=Roseiflexus sp. (strain... [more]
PGK_LACSS2.490e-3060.00Phosphoglycerate kinase OS=Lactobacillus sakei sub... [more]
PGK_THEAB3.252e-3057.14Phosphoglycerate kinase OS=Thermosipho africanus (... [more]
PGK_LEUCK3.252e-3056.14Phosphoglycerate kinase OS=Leuconostoc citreum (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
back to top