CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CORK4 (Phosphoglycerate kinase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.252e-30
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = -2
Query:  327 ATAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLHGVLAFD 662
            A  I DGWMGLD G ++IK+F E L+  KTI WNG +GVFE+  FA G++ +A+ +AE +  G  ++IGGGDS +AV  +G AD+  SHISTGGGASLEL+EGKTL GV   D
Sbjct:  290 ADGIEDGWMGLDTGAESIKTFGERLNGAKTIFWNGPVGVFEFEAFANGTKGLAEAIAEATKNGAFSVIGGGDSASAVRNLGFADEAFSHISTGGGASLELIEGKTLPGVAVLD 402          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_ROSCS (Phosphoglycerate kinase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.247e-30
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = -2
Query:  321 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 653
            IP GW  LD+G + I++++E +   +T+IWNG MGVFE   FA G+ AIA+ +A   G    TIIGGGDSVAA+E++GLADK+ HISTGGGASLELLEG+ L GV A +DA
Sbjct:  288 IPPGWRALDIGPETIRAYTEVITGAQTVIWNGPMGVFELAPFAEGTRAIAQAMANCPGM---TIIGGGDSVAAIEQMGLADKIRHISTGGGASLELLEGRILPGVAALNDA 395          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LEUMM (Phosphoglycerate kinase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.247e-30
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IPDG+MGLD+G  ++K   + L   KT++WNG MGVFE   FA G+ AI ++L +++  G TTI+GGGDS AAV+++G+ADK++HISTGGGASLE LEGK L G+ +  +
Sbjct:  295 IPDGYMGLDIGPKSVKLLQDTLSDAKTVVWNGPMGVFEMSNFAKGTLAIGEELVKVTENGGTTIVGGGDSTAAVQQLGVADKLTHISTGGGASLEYLEGKELPGIASISE 404          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_THELT (Phosphoglycerate kinase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=pgk PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.547e-30
Identity = 64/110 (58.18%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            I DGWMGLD+G   IK F EAL   KT++WNG MGVFE   FA G++A+A+ +A++ G   TT+IGGGDS AAV K GL    SH+STGGGASLE LEGK L G+ +  D
Sbjct:  288 IDDGWMGLDIGPKTIKVFEEALKNAKTVVWNGPMGVFEIEDFAGGTKAVAEMIAKIKG---TTVIGGGDSAAAVAKFGLESAYSHVSTGGGASLEFLEGKDLPGIRSIAD 394          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_THEM4 (Phosphoglycerate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=pgk PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.461e-30
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            IP+GWMGLD+G ++IK F E +   KTI+WNG MGVFE   F  G++ +A  +A  + KG TT+IGGGDS AA+ K  L +K+SH+STGGGASLE LEGK L G+
Sbjct:  287 IPEGWMGLDIGPESIKLFKEKISGAKTIVWNGPMGVFEIEDFETGTKEVAISIAAETEKGATTVIGGGDSAAAIAKFNLKNKVSHVSTGGGASLEFLEGKELPGI 391          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_NEUCR (Phosphoglycerate kinase OS=Neurospora crassa GN=pgk-1 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.461e-30
Identity = 59/110 (53.64%), Postives = 81/110 (73.64%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IPDGWMGLD G +++K F++A++ ++TI+WNG  GVFE+ KFA G++A      + + +G T IIGGGD+     K G+ DK+SH+STGGGASLELLEGK L GV+A  +
Sbjct:  307 IPDGWMGLDCGEESVKLFTQAINESQTILWNGPAGVFEFDKFAKGTKATLDACVKAAEEGRTVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLELLEGKALPGVVALSE 416          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLOAB (Phosphoglycerate kinase OS=Clostridium acetobutylicum GN=pgk PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.236e-29
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IP+G+MGLD+G    K +++A+   KT++WNG MGVFE+  FA G++ +AK +AE      TT+IGGGDS AAV ++G  DKM+HISTGGGASLE LEGK L G++A +D
Sbjct:  290 IPEGYMGLDIGPKTQKLYADAVKEAKTVVWNGPMGVFEFENFAKGTKDVAKAMAE---SDATTVIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALND 396          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_BREBN (Phosphoglycerate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pgk PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.236e-29
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            AIP+GWM LD+G   ++ +   +  +KT++WNG MGVFE   FA G+  +AK +A  SG   TTIIGGGDSVAAVEK G+A++M+HISTGGGASLE +EGK L GV    D
Sbjct:  285 AIPEGWMALDIGPKTVEQYHSVIVDSKTVVWNGPMGVFEMDAFAGGTIGVAKAMAACSG---TTIIGGGDSVAAVEKAGVAEQMTHISTGGGASLEFMEGKELPGVAVLAD 392          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_TRIVI (Phosphoglycerate kinase OS=Trichoderma viride GN=pgk1 PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 62/107 (57.94%), Postives = 75/107 (70.09%), Query Frame = -2
Query:  333 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLA 653
            IPDGWMGLD G ++IK + EA+D  KTI+WNG  GVFE+ KFA G++A    + E    G   IIGGGD+     K G+ DK+SH+STGGGASLELLEGK L GV A
Sbjct:  307 IPDGWMGLDCGDESIKLYKEAIDEAKTILWNGPAGVFEFEKFAGGTKATLDAVVEGCKNGKIVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLELLEGKELPGVTA 413          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SCHMA (Phosphoglycerate kinase OS=Schistosoma mansoni GN=PGK PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = -2
Query:  321 TAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 659
            + I DGWMGLD+G   I+ FS+ +   KTI+WNG MGVFE  KFA G++A   ++ + +  G TTIIGGGD+     K    DK+SH+STGGGASLELLEGK L GV+A  DA
Sbjct:  303 SGIADGWMGLDIGPKTIEEFSKVISRAKTIVWNGPMGVFEMDKFATGTKAAMDEVVKATKNGATTIIGGGDTATCCAKWDTEDKVSHVSTGGGASLELLEGKQLPGVVALTDA 415          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CORK43.252e-3056.64Phosphoglycerate kinase OS=Corynebacterium kroppen... [more]
PGK_ROSCS4.247e-3058.56Phosphoglycerate kinase OS=Roseiflexus castenholzi... [more]
PGK_LEUMM4.247e-3054.55Phosphoglycerate kinase OS=Leuconostoc mesenteroid... [more]
PGK_THELT5.547e-3058.18Phosphoglycerate kinase OS=Thermotoga lettingae (s... [more]
PGK_THEM49.461e-3057.14Phosphoglycerate kinase OS=Thermosipho melanesiens... [more]
PGK_NEUCR9.461e-3053.64Phosphoglycerate kinase OS=Neurospora crassa GN=pg... [more]
PGK_CLOAB1.236e-2955.45Phosphoglycerate kinase OS=Clostridium acetobutyli... [more]
PGK_BREBN1.236e-2956.76Phosphoglycerate kinase OS=Brevibacillus brevis (s... [more]
PGK_TRIVI1.614e-2957.94Phosphoglycerate kinase OS=Trichoderma viride GN=p... [more]
PGK_SCHMA1.614e-2954.87Phosphoglycerate kinase OS=Schistosoma mansoni GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
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