CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_DEIDV (Phosphoglycerate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=pgk PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 63/110 (57.27%), Postives = 81/110 (73.64%), Query Frame = -2
Query:  333 ATAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLA 662
            A  IP+GWMGLD+G D  ++++EAL   KT+ WNG MGVFE+  FAAG+ A+A  +  L  +   T++GGGDSV+A+ K G AD++ HISTGGGASLELLEGK L GV A
Sbjct:  279 ADQIPEGWMGLDIGPDTQQAYTEALRGAKTVFWNGPMGVFEFPAFAAGTNAVAAAVGSLKNQAY-TVVGGGDSVSAINKSGKADQIDHISTGGGASLELLEGKALPGVEA 387          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PELTS (Phosphoglycerate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=pgk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IP  WM LD+G ++I+ F+EAL   +T++WNG MGVFE   FA G+EAIA+ LAEL+     T+IGGGD+ AA +K G+A KM+HISTGGGASLE LEGK L GV A  D
Sbjct:  286 IPAEWMALDIGPESIRLFTEALRAARTVVWNGPMGVFEMDPFARGTEAIARTLAELN---AVTVIGGGDTAAAAKKAGVAGKMTHISTGGGASLEFLEGKQLPGVRALLD 392          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CHLL2 (Phosphoglycerate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=pgk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 61/111 (54.95%), Postives = 83/111 (74.77%), Query Frame = -2
Query:  324 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 656
            AIPDG +G+D+G +   ++ + +   +T++WNG MGVFE  +FA G+ AIA+ +A+ +  G TTIIGGGDS AAV K GLAD+++HISTGGGASLE LEGK L G+ A +D
Sbjct:  287 AIPDGMIGVDIGPETRAAYRQEILGARTVLWNGPMGVFEIDRFAEGTIAIAEAMADATAAGATTIIGGGDSAAAVAKAGLADQITHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CHICK (Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = -2
Query:  339 ATAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 662
            A+ IP GWMGLD G +++K F E +   K I+WNG +GVFE+ KF+ G++A+  K+ E++GKG  TIIGGGD+     K    DK+SH+STGGGASLELLEGK L GV
Sbjct:  304 ASGIPAGWMGLDCGPESVKKFVEVVGRAKQIVWNGPVGVFEWDKFSKGTKALMDKVVEVTGKGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGV 411          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_RHOE4 (Phosphoglycerate kinase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pgk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.753e-29
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = -2
Query:  327 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLHGVLAFD 653
            IPDGWMGLD+G +++K F+  L   KT+ WNG MGVFE+ KF AG+  +A+ + E + KG  +++GGGDS AAV ++G+ D+  SHISTGGGASLE LEGK L G+   +
Sbjct:  293 IPDGWMGLDIGPESVKRFAAILTGAKTVFWNGPMGVFEFPKFEAGTRGVAEAIVEATEKGAFSVVGGGDSAAAVRQLGIPDEGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLONN (Phosphoglycerate kinase OS=Clostridium novyi (strain NT) GN=pgk PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.595e-29
Identity = 62/110 (56.36%), Postives = 81/110 (73.64%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IP+G+MGLD+G      +++A+ T KT++WNG MGVFE+  FA G+ A+A+ +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK L G++A  D
Sbjct:  291 IPEGYMGLDIGPKTSALYADAVRTAKTVVWNGPMGVFEFANFAKGTIAVAEAMAEADA---TTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALSD 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_TREDE (Phosphoglycerate kinase OS=Treponema denticola GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.696e-29
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = -2
Query:  327 ATAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFD 662
            +T IPD  MG+DVG   +  + E + ++K+I+WNG +GVFE+  F+ G+E  A+ +A  + KG  TI+GGGDSVAAV K  LADKMSH+STGGGASLE LEGK L G+   D
Sbjct:  306 STDIPDNLMGMDVGPKTLALYKEIILSSKSIVWNGPVGVFEFEAFSKGTEETARLVAAATEKGALTIVGGGDSVAAVNKFNLADKMSHVSTGGGASLEFLEGKVLPGIACLD 417          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_FERNB (Phosphoglycerate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.696e-29
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IP+GW G D+G  +I+     L   KTI+WNG +GVFE   FA G++A+A+ +A L+ KGVTT++GGGDS AAV + GL  K SH+STGGGASLE LEGK L G+ +  D
Sbjct:  287 IPEGWAGYDIGPASIELIKSKLADAKTIVWNGPLGVFEIEDFANGTKAVAEFIASLTDKGVTTVVGGGDSAAAVSQFGLEKKFSHVSTGGGASLEFLEGKELPGIASIAD 396          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CHLT3 (Phosphoglycerate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.696e-29
Identity = 60/112 (53.57%), Postives = 78/112 (69.64%), Query Frame = -2
Query:  321 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 656
            +I D WMGLD+G +    F E +   KT+IWNG MGVFE  KFA G+ A+A+ LA+ + +G  T+IGGGDS AA+   GL D ++H+STGGGASLE LEGK L G+ A  +A
Sbjct:  286 SIEDDWMGLDIGPETANCFREEVVNAKTVIWNGPMGVFEMEKFAKGTMAVAQALADATKQGAITVIGGGDSAAAIAVAGLEDSVTHVSTGGGASLEFLEGKELPGIAALSNA 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_SYMTH (Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = -2
Query:  339 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 656
            AIP+GWM LD+G +  ++F++ +    T++WNG MGVFE   FA G+ A+A+ +A+  G    TI+GGGDSVAAVE  GLAD+M+H+STGGGASLE LEGK L GV
Sbjct:  283 AIPEGWMALDIGPETARAFADVIRGAHTVVWNGPMGVFEMEPFARGTFAVAQAMADCEG---VTIVGGGDSVAAVEAAGLADRMTHVSTGGGASLEFLEGKELPGV 385          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_DEIDV1.614e-2957.27Phosphoglycerate kinase OS=Deinococcus deserti (st... [more]
PGK_PELTS2.108e-2959.09Phosphoglycerate kinase OS=Pelotomaculum thermopro... [more]
PGK_CHLL22.108e-2954.95Phosphoglycerate kinase OS=Chlorobium limicola (st... [more]
PGK_CHICK2.108e-2955.56Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE... [more]
PGK_RHOE42.753e-2953.64Phosphoglycerate kinase OS=Rhodococcus erythropoli... [more]
PGK_CLONN3.595e-2956.36Phosphoglycerate kinase OS=Clostridium novyi (stra... [more]
PGK_TREDE4.696e-2954.46Phosphoglycerate kinase OS=Treponema denticola GN=... [more]
PGK_FERNB4.696e-2954.55Phosphoglycerate kinase OS=Fervidobacterium nodosu... [more]
PGK_CHLT34.696e-2953.57Phosphoglycerate kinase OS=Chloroherpeton thalassi... [more]
PGK_SYMTH6.133e-2956.60Phosphoglycerate kinase OS=Symbiobacterium thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
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