CN189202

Overview
NameCN189202
Unique NameCN189202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1
Query:  238 DSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 642
            DS      L   PK LP      D+ Q IG TP+V +NK+ +  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA+KGY+ ++ MP   SLE+   +RA GA+++ T
Sbjct:   62 DSPHQHAALAKSPKILP------DILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDT-IIEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRT 191          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 53/125 (42.40%), Postives = 77/125 (61.60%), Query Frame = 1
Query:  274 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 642
            PK LP      D+ + IG TP+V +N++S+  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA+KGY+ ++ MP   S+E+   +RA GA+++ T
Sbjct:   71 PKILP------DILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDT-IIEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRT 188          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 56/140 (40.00%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  298 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            I  D S  IG TPLV LN +  G    I  K E   P+ S+K R    M+ DAE K  ++     IIE TSGN GI++A++AA + Y + L MP   S+ERR  +++ GA LILT+   GM G + KA E++      ++
Sbjct:    4 IYEDNSFTIGNTPLVRLNNIGNG---NILAKIESRNPSFSVKCRIGANMIWDAEKKGRLNKN-IEIIEATSGNTGIALAYVAAARNYSLTLIMPDSMSIERRKLLKSLGAHLILTNGKHGMKGAISKANEIVSLNTKRYL 139          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  274 PKDLPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 642
            PK LP      D+ + IG TP+V +NK+ +  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA++GY+ ++ MP   S E+   +RA GA+++ T
Sbjct:   74 PKILP------DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT 191          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 51/125 (40.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  274 PKDLPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 642
            PK LP      D+ + IG TP++ +NK+ +  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA++GY+ ++ MP   S E+   +RA GA+++ T
Sbjct:   74 PKILP------DILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDT-IIEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT 191          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 56/126 (44.44%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  265 RDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILT 642
            R  PK L   NI  +    IG TPLV +NKVS      +  K E F    S+KDR    M+ DAE    I  G T +IEPTSGN GI +A  AA+KGYKM++T+P   S E+   ++A GA++I T
Sbjct:   25 RRTPKKLIMDNILDN----IGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRT 145          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  307 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAF 714
            D+++LIG TPL+ L       G  +  K EM  P  SIKDR    ++ DA +   + PG   IIE T+GN GI +A  A   G K +  +P + S E++  M+A GA +I T    GM G ++KA +L     N++
Sbjct:    6 DITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPGGV-IIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSY 140          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK1_SCHPO (Cysteine synthase 1 OS=Schizosaccharomyces pombe GN=cys11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 53/132 (40.15%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  322 IGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL--ILTDPAKGMGGTVKKAQELLESTPNA 711
            IGRTPL+ LN +S   G  I  K E   P  S+KDR A  ++ DAE K  +S G  TI+E T+GN GI +A +A  +GYK V+ MP+  S  +  T++  GA++  +   P         +A+   ESTPNA
Sbjct:   21 IGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRG-GTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNA 151          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK_EMENI (Cysteine synthase OS=Emericella nidulans GN=cysB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  310 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 633
            +++ IG TPL+ L ++SE  G+ I  K E   P  S+KDR A+ +++DAE + L+ PG  T++E T+GN GI +A +   KGYK+V+ MP+  S  +   +R  GA++
Sbjct:   36 LTEAIGNTPLIRLKRLSEETGSNILAKAEFQNPGGSVKDRAALYVVKDAEERGLLKPG-GTVVEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAEV 142          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSM_HELPY (Cysteine synthase OS=Helicobacter pylori GN=cysM PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 1
Query:  322 IGRTPLV-FLNK-VSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            IGRTP+  F NK       + I  K E   P  S+KDR    ++ +      I+  KTTIIEPT+GN GI++A +A     K +  +P   S E++  MRA GA +I T  ++G+ G +KK++EL ES P++++
Sbjct:   11 IGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKIT-SKTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYL 143          
The following BLAST results are available for this feature:
BLAST of CN189202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CBS_RABIT4.635e-2042.34Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CBS_RAT6.053e-2042.40Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CYSK_BUCAP1.142e-1840.00Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CBS_HUMAN1.947e-1841.60Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CBS_MACFA2.543e-1840.80Cystathionine beta-synthase OS=Macaca fascicularis... [more]
CBS_DICDI2.543e-1844.44Cystathionine beta-synthase OS=Dictyostelium disco... [more]
MCCA_BACSU8.182e-1736.76O-acetylserine dependent cystathionine beta-syntha... [more]
CYSK1_SCHPO3.109e-1640.15Cysteine synthase 1 OS=Schizosaccharomyces pombe G... [more]
CYSK_EMENI4.060e-1639.81Cysteine synthase OS=Emericella nidulans GN=cysB P... [more]
CYSM_HELPY2.632e-1538.06Cysteine synthase OS=Helicobacter pylori GN=cysM P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189202 ID=CN189202; Name=CN189202; organism=Citrus sinensis; type=EST; length=718bp
GAGGCATCACCACACTCAGAGCCTTAATTTGTTATCCGCTGCAAGTGCTG
GTGGAAGTGGGAGTGGTTCTTGTAAAGAGTGAATTATTATTTTTGCTCAA
ATTTAAAGTTCCTCCTCCAACCTCCATTATTATTAAAAATGGCTGCTGCT
TTGAGGAGTTTCTTGAAGAAAAGAGCCTTAACATGCAGCGAACCCATGTT
GATGAGAAGACTGGTCTCCTCACAGCCGGCGCCGGTTGATTCTTCATCTT
TTGCTCAGAGACTCAGAGATTTGCCCAAGGATCTTCCAGCTACCAACATC
AAGAGAGATGTTTCCCAGCTCATTGGAAGAACCCCGCTTGTGTTTCTTAA
CAAAGTCAGTGAAGGATGTGGAGCTTATATTGCTGTCAAGCAAGAAATGT
TCCAACCCACTGCTAGCATCAAGGACAGACCAGCAGTGGCCATGCTCGAA
GATGCAGAAAATAAAAACTTAATTTCTCCCGGAAAGACCACTATCATAGA
GCCCACGTCAGGGAACATGGGAATAAGCATGGCGTTTATGGCAGCAATGA
AAGGGTATAAGATGGTTCTAACTATGCCCTCTTATACAAGCTTGGAGAGG
AGAGTGACAATGAGAGCATTTGGAGCTGATTTAATCCTCACAGATCCAGC
CAAGGGGATGGGAGGAACTGTTAAGAAGGCTCAAGAACTTTTGGAATCCA
CACCAAATGCTTTCATGC
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