CN189202

Overview
NameCN189202
Unique NameCN189202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  322 IGRTPLVFLNKVSEGCGAYIAV--KQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            IGRTP+    +         A+  K E   P  S+KDR    ++++A     I+   TTIIEPT+GN GI++A +A     K +  +P   S E++  MRA GA +I T  ++G+ G +KK++EL ES P++++
Sbjct:   10 IGRTPIFKFTRKDYPIPLKSAIYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKIT-STTTIIEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYL 142          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  259 RLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKT-TIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL------ILTDPAKGMGGTVKKAQELLES 699
            + RD+P+       K  V +LIG TPLV +  +++  G  I  K E+  P  S KDR A+ +++ AE    +  G+   + E TSG+ GIS+A +    GY+  +++P  TSLE+   + + GA +       + DP + +    K   EL +S
Sbjct:   38 KTRDIPRP------KEGVEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELKKS 185          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  292 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGM 660
            + I   + + +G TPL+ +  +SE  G  I  K E   P  S KDR A  ++ D E K L+  G +TI+E T+G+ GIS+  +   +GY + L +P   S E+   +   GA+  +  P  GM
Sbjct:   36 SGISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKG-STIVEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIV-PIVGM 156          
The following BLAST results are available for this feature:
BLAST of CN189202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYSM_HELPJ7.658e-1535.82Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
CYSK_YEAST9.361e-1331.17Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSK_DICDI7.924e-1233.33Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189202 ID=CN189202; Name=CN189202; organism=Citrus sinensis; type=EST; length=718bp
GAGGCATCACCACACTCAGAGCCTTAATTTGTTATCCGCTGCAAGTGCTG
GTGGAAGTGGGAGTGGTTCTTGTAAAGAGTGAATTATTATTTTTGCTCAA
ATTTAAAGTTCCTCCTCCAACCTCCATTATTATTAAAAATGGCTGCTGCT
TTGAGGAGTTTCTTGAAGAAAAGAGCCTTAACATGCAGCGAACCCATGTT
GATGAGAAGACTGGTCTCCTCACAGCCGGCGCCGGTTGATTCTTCATCTT
TTGCTCAGAGACTCAGAGATTTGCCCAAGGATCTTCCAGCTACCAACATC
AAGAGAGATGTTTCCCAGCTCATTGGAAGAACCCCGCTTGTGTTTCTTAA
CAAAGTCAGTGAAGGATGTGGAGCTTATATTGCTGTCAAGCAAGAAATGT
TCCAACCCACTGCTAGCATCAAGGACAGACCAGCAGTGGCCATGCTCGAA
GATGCAGAAAATAAAAACTTAATTTCTCCCGGAAAGACCACTATCATAGA
GCCCACGTCAGGGAACATGGGAATAAGCATGGCGTTTATGGCAGCAATGA
AAGGGTATAAGATGGTTCTAACTATGCCCTCTTATACAAGCTTGGAGAGG
AGAGTGACAATGAGAGCATTTGGAGCTGATTTAATCCTCACAGATCCAGC
CAAGGGGATGGGAGGAACTGTTAAGAAGGCTCAAGAACTTTTGGAATCCA
CACCAAATGCTTTCATGC
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