CN189201

Overview
NameCN189201
Unique NameCN189201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.066e-29
Identity = 61/122 (50.00%), Postives = 87/122 (71.31%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NPNVK++GVEP ES  L+GGKPGPH I G G GF P +L++++++ V +V S+++++MA+ LALKEG++VGIS GA   AA+++   P   GKL V +   FG   LS VLF+ +R+E  NM
Sbjct:  200 NPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLEVNLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVVIFPSFGERYLSSVLFETVRREAENM 321          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.507e-28
Identity = 60/122 (49.18%), Postives = 86/122 (70.49%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NP+VK+ G+EP ES  L+GGKPGPH I G G GF P +LD++++++V ++ S+++++MA+ LALKEG++VGIS GA   AA+++   P   GKL V V   FG   LS VLF  +RKE  +M
Sbjct:  200 NPDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGFIPGVLDVNIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVAVFPSFGERYLSSVLFDSVRKEAESM 321          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.020e-27
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = -2
Query:  249 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNMQP 620
            NP  ++ GVEP ES+ L+GGKPGPH I G G GF P  LD  +M++V  + S++A++ A++LALKEG+MVGIS GA   AA+++   P   GKL   V   FG   LS  LFQ +R+E   MQP
Sbjct:  305 NPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQP 428          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = -2
Query:  249 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNMQP 620
            NPN+KI GVEP ESN L+GGKPG          F P  LD DVM++V E+ SD+AV+ A++LAL+EG++VGIS GA  +AA+++   P   GKL   V   FG   LS +LFQ +R+E   M+P
Sbjct:  259 NPNIKIIGVEPTESNVLSGGKPG----------FIPGNLDQDVMDEVIEISSDEAVETAKQLALQEGLLVGISSGAAALAAIQVAKRPENAGKLIAVVFPSFGERYLSSILFQSIREECEKMKP 372          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = -2
Query:  249 PNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNMQP 617
            P +K+ GVEP ES  L+GGKPGPH I G G GF P  LD+ ++++   + S++A++ +++LAL+EG++VGIS GA   AA+++   P   GKL   V   FG   LS  LFQ +R+E   MQP
Sbjct:  268 PELKVIGVEPTESAILSGGKPGPHKIQGIGAGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENAGKLIAVVFPSFGERYLSTQLFQSIREECEQMQP 390          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = -2
Query:  276 PNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQEL 617
            P+ +   VEPA S  L+GG+ GPH I G G GF P +LD D+++++  V ++DA+ +AR LA +EG++VGIS GA TVAAL++   P   GKL V V   FG   LS  LF ++
Sbjct:  195 PSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADV 308          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = -2
Query:  276 PNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQEL 617
            P+ +   VEPA S  L+GG+ GPH I G G GF P +LD D+++++  V ++DA+ +AR LA +EG++VGIS GA TVAAL++   P   GKL V V   FG   LS  LF ++
Sbjct:  195 PSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADV 308          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.208e-20
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  276 PNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQEL 617
            P+ +   VEP  S  L+GGKPGPH I G G GF P++LD++++++V  V  ++A+   R LA +EG++ GIS GA   AA+++   P  K KL V +   FG   LS  LFQ+L
Sbjct:  198 PSFQAIAVEPQNSPVLSGGKPGPHKIQGIGAGFIPEVLDVNLIDEVIAVTDEEAIAYGRRLAREEGILSGISTGAALAAAIKVAKRPANKDKLIVMIQPSFGERYLSTPLFQDL 311          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  276 PNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQEL 617
            P  +   VEPA S  L+GG+ GPH I G G GF P +L +D+++++  V +++A+ +AR LA +EG++VGIS GA   AAL +   P   GKL V V   FG   LS +LF +L
Sbjct:  195 PATQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPSVLVLDLVDEIVTVGNEEALDLARRLAKEEGLLVGISAGAAVCAALHVARRPENTGKLIVVVLPDFGERYLSTMLFADL 308          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-18
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = -2
Query:  282 PNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQ 617
            P++KI+ VEP++S  L+GGKPGPH I G G GF PDIL+ +V +++F V +++A + AR  A +EG++ GIS GA   AAL++    G KGK  + +    G   LS  L+Q
Sbjct:  196 PSIKIYAVEPSDSPVLSGGKPGPHKIQGIGAGFVPDILNTEVYDEIFPVKNEEAFEYARRAAREEGILGGISSGAAIYAALQVAKKLG-KGKKVLAIIPSNGERYLSTPLYQ 306          
The following BLAST results are available for this feature:
BLAST of CN189201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSK_SOLTU7.066e-2950.00Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_SPIOL3.507e-2849.18Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSKM_ARATH1.020e-2749.19Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSKP_CAPAN2.127e-2549.19Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_ARATH3.629e-2545.53Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK_MYCTU4.152e-2146.49Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO4.152e-2146.49Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_SYNY31.208e-2042.98Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
CYSK_MYCLE8.657e-1943.86Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]
CYSK_BACSU1.477e-1844.64Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189201 ID=CN189201; Name=CN189201; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTAAAATTCAAAATTCCAAGTATTTAAATTCAAAA
TTCCAAATACCCCAACTGCAAAAAATCATTTTCATTTTCATTTTTATTCT
TAAAAAAAACAAATTGAAACAATACCAAACGGGCCTAAACTATCTGAAGG
GATCAAATTTCATACAAATAAAGTTCAACAAGCAAATTTGATACAAGTTC
ACCTTTCTAAAAAACAACCCCCATATACAAGCATTATTCAACTGAAACTG
GTTGCATGTTCCCACCTTCTTTCCTGAGTTCTTGAAACAAAACAAATGAC
AAGTTTCCCCCCCCAAAGCCCCCATGAACAGTCACAAAAAGTTTGCCTTT
TTTCCCTGGCATGCTAACAAGTCTTAGGGCTGCCACTGTATTGGCCCCAA
ATGATATTCCAACCATAACCCCTTCCTTCAATGCCAGTTCCCTGGCCATT
TTTACTGCATCGTCACTACAAACCTCAAAAACCTTTTCCATCACATCCAT
GTCTAGAATATCGGGTTTGAACCCAACCCCCTTGCCAGTAATGAAATGAG
GACCTGGTTTGCCCCCATTCAAAAAATTACTTTCAGCCGGTTCCACCCCA
AAGATCTTAACATTAGGATTT
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