CN189201

Overview
NameCN189201
Unique NameCN189201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = -2 
Query:  267 KPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKE 560
            KPGPH I G G GF P  LD+ +++KV  + +++A+  AR L  +EG++ GIS GA   AAL+L        K  V +    G   LS  LF +L  E
Sbjct:  221 KPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTE 318
[Close]
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = -2 
Query:  258 VEPAES----NFLNGGK--PGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGN 596
            VEP ES     FL+G K  PG H I G G GF P  LD+ +++++  V S++A+  A+++  KEG++ GIS GA   AAL++      K K  V +    G   LS  LF    K   N
Sbjct:  203 VEPLESPVITQFLSGKKIKPGLHKIQGIGAGFIPKNLDLSLIDRIITVSSEEAIFNAKKIMKKEGILSGISSGAAIAAALKIQKENDFKNKNIVVILPSSGERYLSTELFSRSFKNENN 321
The following BLAST results are available for this feature:
BLAST of CN189201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSK_ECO572.982e-1139.80Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CYSK_BUCAP6.644e-1137.82Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001H17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189201 ID=CN189201; Name=CN189201; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTAAAATTCAAAATTCCAAGTATTTAAATTCAAAA
TTCCAAATACCCCAACTGCAAAAAATCATTTTCATTTTCATTTTTATTCT
TAAAAAAAACAAATTGAAACAATACCAAACGGGCCTAAACTATCTGAAGG
GATCAAATTTCATACAAATAAAGTTCAACAAGCAAATTTGATACAAGTTC
ACCTTTCTAAAAAACAACCCCCATATACAAGCATTATTCAACTGAAACTG
GTTGCATGTTCCCACCTTCTTTCCTGAGTTCTTGAAACAAAACAAATGAC
AAGTTTCCCCCCCCAAAGCCCCCATGAACAGTCACAAAAAGTTTGCCTTT
TTTCCCTGGCATGCTAACAAGTCTTAGGGCTGCCACTGTATTGGCCCCAA
ATGATATTCCAACCATAACCCCTTCCTTCAATGCCAGTTCCCTGGCCATT
TTTACTGCATCGTCACTACAAACCTCAAAAACCTTTTCCATCACATCCAT
GTCTAGAATATCGGGTTTGAACCCAACCCCCTTGCCAGTAATGAAATGAG
GACCTGGTTTGCCCCCATTCAAAAAATTACTTTCAGCCGGTTCCACCCCA
AAGATCTTAACATTAGGATTT
back to top