CX676024

Overview
NameCX676024
Unique NameCX676024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = -1
Query:  352 MEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 576
            +EII T  LV  V AT    ++  LG   P+AIGF V    L A  ++G  +NPARSFG +V + NFQD+WI+WV
Sbjct:  143 IEIIGTLQLVLCVLATTDRRRRRDLGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWV 217          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  352 EIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 573
            EIII+F L++ +   A D +  + G +A IA+G  +  N+  AGP SG SMNPARS GPA+  G ++  W+Y V
Sbjct:  165 EIIISFLLMFVISGVATDSR--ATGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIV 236          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  352 EIIITFGLVYTVYATAADPKKGS----LGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGN---FQDNWIYWV 573
            EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFGPAV   N   + D WIYWV
Sbjct:  176 EIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWV 255          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = -1
Query:  358 MEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIY 576
            +E II+F L++ V A A D +  ++G +A IA+G  V  NIL AGP +  SMNP R+ GPA+A+ N++  W+Y
Sbjct:  200 LEFIISFNLMFVVTAVATDTR--AVGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRAIWVY 270          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = -1
Query:  352 EIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 573
            EIII+F L++ +   A D +  ++G +A IA+G  +  N+  AGP SG SMNPARS GPA+  G ++  W+Y V
Sbjct:  165 EIIISFLLMFVISGVATDNR--AVGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIV 236          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  352 MEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 576
            +EII T  LV  V AT  D ++  LG   P+AIGF V    L A  ++G  +NPARSFG +V + NFQD+WI+WV
Sbjct:  143 IEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWV 216          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = -1
Query:  358 MEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIY 576
            +E +I+F L++ V   A D +  ++G +A +A+G  V  N+L AGP +G SMNPARS GPA+ +G +   W+Y
Sbjct:  191 LEFVISFFLMFVVSGVATDNR--AIGELAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGRYGGVWVY 261          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  352 MEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 576
            +E+I+TF +++   A A D +  ++G +A +A+G  V    + AG  SGGSMNPAR+ GPA+AS  F   WIY++
Sbjct:  169 VEVIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPALASNKFDGLWIYFL 241          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  352 MEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 576
            +EI++TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNPAR+  PAVAS  F   WIY++
Sbjct:  175 IEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFL 247          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  352 MEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 576
            +EI++TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNPAR+  PAVAS  F   WIY++
Sbjct:  172 IEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFL 244          
The following BLAST results are available for this feature:
BLAST of CX676024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
AQP1_SHEEP1.396e-1148.00Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
NIP42_ARATH1.823e-1144.59Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
PIP27_MAIZE2.381e-1150.62Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
NIP61_ARATH2.381e-1145.21Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]
NIP41_ARATH3.109e-1144.59Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
AQP1_BOVIN3.109e-1149.33Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
NIP12_ORYSJ4.061e-1142.47Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
NIP21_ORYSJ5.304e-1142.67Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
NIP23_MAIZE6.927e-1144.00Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP22_MAIZE6.927e-1144.00Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66E03-J6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676024 ID=CX676024; Name=CX676024; organism=Citrus sinensis; type=EST; length=630bp
TTTTTAAAGACTAAAGAGTGTCATTCAAGCATGTCTCCCAATCCATCCAT
TATCGTCAGAAAAGCCGCAATGGACCACCACAACAAAGACTTTTTACAAC
CTCCAAAAGAAATGATTTAAAAAGAAGGATACCAAGAAACTAAAGAAGAA
AAGAAGAAAGAGCCAAAGCTGCTTTTCCTTCTTTTATTACAAAAAAGAAA
GAGCCAAAAGCAGGTGATCAAATGATTTAACTAAACTTTTAAACAAAGTT
TAACTAATTAATTAATAGTCATTAGATAGGGGTGCATGTTCAGAGTGCAT
GAACACATTGCCATAGATGAGCCCGGCAAGGCCACCGCCAATGAGAGGGC
CAACCCAGTAGATCCAGTTGTCCTGAAAGTTGCCGCTGGCAACGGCAGGC
CCGAAGGAACGGGCCGGGTTCATGGAACCACCGGAGAATGGGCCGGCGGC
CAGGATGTTGGCACCGACNATGAAACCGATGGCAATGGGTGCAATGGTGC
CCAATGATCCCTTCTTGGGGTCAGCTGCCGTGGCATAGACCGTGTAGACC
AAACCAAATGTGATGATGATCTCCATCACAACTCCGTCAATGGCTCCAAC
TCCAGCAACAACATTGTGGGTAGGAACTGC
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