CX676023

Overview
NameCX676023
Unique NameCX676023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 62/184 (33.70%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  117 FKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGS----LGTIAPVAIGFIVG----ANIPAAG 632
            ++A +AEF++T LF++  + + +  +K T+  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY I Q LG++  + ++K    GL +      +              EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V     A IP  G
Sbjct:   54 YRAGIAEFVATFLFLYITILTVMGVSKSTSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITG 234          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  105 SLGSFKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPVAIGF 602
            S   ++A  AEF +TL +VF  +G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L  I Y  AQLLG++  + +L  VT     G LA+ T              +EI +T   V  ++AT  + + G LG++A +A+GF
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNT--LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGF 166          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 55/171 (32.16%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  105 SLGSFKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPVAIGF 602
            S   ++A  AEF  T+ +VF  +G+++ +       A  P+ ++ IA+  G  L   V    ++SG H+NPAVTF   +G Q+++   IFY  AQLLG++  + +L  VT     G LA+ T              +EI +T   V  ++AT  + + G LG+++ +AIGF
Sbjct:    6 SFSFWRAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNT--LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGF 166          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 57/171 (33.33%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  105 SLGSFKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPVAIGF 602
            S   ++A  AEF ++L +VF  +G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L  I Y +AQLLG++  + +L  VT     G LA+ T              +EI +T   V  ++AT  + + G LG++A +A+GF
Sbjct:    6 SASFWRAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGF 166          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 60/184 (32.61%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  117 FKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGS----LGTIAPVAIGFIVG----ANIPAAG 632
            ++A +AEF++T LF++  + + +  +K ++  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG++  + ++K    GL +      +              EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V     A IP  G
Sbjct:   53 YRAGIAEFVATFLFLYISILTVMGVSKSSSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITG 233          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 61/184 (33.15%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  117 FKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGS----LGTIAPVAIGFIVG----ANIPAAG 632
            ++A +AEF++T LF++  + + +  +K ++  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   IFY + Q LG++  + ++K    GL +      +              EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V     A IP  G
Sbjct:   54 YRAGIAEFVATFLFLYITILTVMGVSKSSSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITG 234          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 58/171 (33.92%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  105 SLGSFKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPVAIGF 602
            S   ++A  AEF +TL +VF  +GS++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T              +EI +T   V  ++AT  + + G LG++A +A+GF
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGF 166          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 59/184 (32.07%), Postives = 95/184 (51.63%), Query Frame = 3
Query:  117 FKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVTGG----LAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGS----LGTIAPVAIGFIVG----ANIPAAG 632
            ++A +AEF++T LF++  + + +   +  +D+     G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG++  + ++K    G    L    +              EII TF LVYTV+ +A D K+ +    +  +AP+ IGF V     A IP  G
Sbjct:   52 YRAGIAEFMATFLFLYITILTVMGLKR--SDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITG 232          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 64/188 (34.04%), Postives = 94/188 (50.00%), Query Frame = 3
Query:  117 FKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGS----LGTIAPVAIGFIVG----ANIPAAG 632
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY I Q LG++  + ++K         + GG     H              EII TF LVYTV+ +A D K+ +    +  +AP+ IGF V     A IP  G
Sbjct:   52 YRAGIAEFIATFLFLYITVLTVMGVKRAPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHG----YTKGSGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITG 232          
BLAST of CX676023 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  105 SLGSFKAYLAEFISTLLFVFAVVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSLVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXMEIIITFGLVYTVYATAADPKKGSLGTIAPVAIGF 602
            S   ++A  AEF +TL +VF  +GS++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T              +EI +T   V  ++AT  + + G +G++A +A+GF
Sbjct:    4 SASFWRAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGF 164          
The following BLAST results are available for this feature:
BLAST of CX676023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
PIP12_MAIZE1.978e-1633.70Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
MIP_RABIT1.978e-1633.92Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_RANPI2.583e-1632.16Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_BOVIN2.583e-1633.33Lens fiber major intrinsic protein OS=Bos taurus G... [more]
PIP15_MAIZE3.374e-1632.61Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP11_ORYSJ3.374e-1633.15Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
MIP_HUMAN3.374e-1633.92Lens fiber major intrinsic protein OS=Homo sapiens... [more]
PIP1_SOLLC7.516e-1632.07Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP14_ARATH7.516e-1634.04Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
MIP_RAT7.516e-1633.33Lens fiber major intrinsic protein (Fragment) OS=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66E03-J6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676023 ID=CX676023; Name=CX676023; organism=Citrus sinensis; type=EST; length=647bp
TTCTTCTTCTTAAGAAAGACTCGAGAGAGTTTTTTTTTCCCTATTCTCTA
GCTCTTTCTTGATCAACAATGGCTATTGCCTTCGGCCGCTTCGATGATTC
TTTCAGCTTAGGCTCCTTCAAGGCCTATCTTGCTGAGTTTATCTCAACTT
TGCTCTTTGTTTTCGCCGTCGTTGGCTCGGCCATTGCTTTCAACAAGATG
ACAGCAGATGCAGCACTTGATCCATCAGGGCTAGTAGCCATCGCTATTTG
CCATGGATTTGCTCTATTTGTCGCAGTTGCAATTGGTGCTAACATCTCAG
GTGGCCACGTCAACCCAGCCGTCACCTTTGGATTGGCTCTTGGTGGCCAA
ATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAACTTCTTGGCTC
TCTTGTTGCCAGCTTCCTCCTCAAAGTTGTCACTGGAGGCTTGGCAGTTC
CTACCCACAATGTTGCTGCTGGAGTTGGAGCCGTTGAAGGAGTTGTGATG
GAGATCATCATCACATTTGGTTTGGTCTACACGGTCTATGCCACGGCAGC
TGACCCCAAGAAGGGATCATTGGGCACCATTGCACCCGTTGCCATCGGTT
TCATTGTCGGTGCCAACATCCCGGCCGCCGGCCCATTCTCCGGTGGT
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