CN189174

Overview
NameCN189174
Unique NameCN189174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP4C_MOUSE (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Mus musculus GN=Ppp4c PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  437 LVLTASKILHKEPNCVVIDDFDQDSRVVVVGDVHGQLHDVLFLLRDAG-FPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            L   A +IL +E N   +D     S V V GD+HGQ +D+  L R  G  P  N  ++F GD+VDRG + +ETFLLLLA KV  P R+ L+RGNHES+  T VY
Sbjct:   28 LCAKAREILVEESNVQRVD-----SPVTVCGDIHGQFYDLKELFRVGGDVPETN--YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVY 124
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP4C_HUMAN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  437 LVLTASKILHKEPNCVVIDDFDQDSRVVVVGDVHGQLHDVLFLLRDAG-FPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            L   A +IL +E N   +D     S V V GD+HGQ +D+  L R  G  P  N  ++F GD+VDRG + +ETFLLLLA KV  P R+ L+RGNHES+  T VY
Sbjct:   28 LCAKAREILVEESNVQRVD-----SPVTVCGDIHGQFYDLKELFRVGGDVPETN--YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVY 124
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP4C_BOVIN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Bos taurus GN=PPP4C PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  437 LVLTASKILHKEPNCVVIDDFDQDSRVVVVGDVHGQLHDVLFLLRDAG-FPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            L   A +IL +E N   +D     S V V GD+HGQ +D+  L R  G  P  N  ++F GD+VDRG + +ETFLLLLA KV  P R+ L+RGNHES+  T VY
Sbjct:   28 LCAKAREILVEESNVQRVD-----SPVTVCGDIHGQFYDLKELFRVGGDVPETN--YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVY 124
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP4CB_DANRE (Serine/threonine-protein phosphatase 4 catalytic subunit B OS=Danio rerio GN=ppp4cb PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  437 LVLTASKILHKEPNCVVIDDFDQDSRVVVVGDVHGQLHDVLFLLRDAG-FPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            L   A +IL +E N   +D     S V V GD+HGQ +D+  L R  G  P  N  ++F GD+VDRG + +ETFLLLLA KV  P R+ L+RGNHES+  T VY
Sbjct:   28 LCAKAREILVEESNVQRVD-----SPVTVCGDIHGQFYDLKELFRVGGDVPETN--YLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVY 124
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP2AB_RAT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Rattus norvegicus GN=Ppp2cb PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:  434 TLVLTASKILHKEPNCVVIDDFDQDSR--VVVVGDVHGQLHDVLFLLRDAGFPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            TL   A +IL KE N        Q+ R  V V GDVHGQ HD++ L R  G  S +  ++F GDYVDRG + +ET  LL+A KV  P R+ +LRGNHES+  T VY
Sbjct:   30 TLCEKAKEILTKESNV-------QEVRCPVTVCGDVHGQFHDLMELFRIGG-KSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVY 127
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP2AB_RABIT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Oryctolagus cuniculus GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:  434 TLVLTASKILHKEPNCVVIDDFDQDSR--VVVVGDVHGQLHDVLFLLRDAGFPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            TL   A +IL KE N        Q+ R  V V GDVHGQ HD++ L R  G  S +  ++F GDYVDRG + +ET  LL+A KV  P R+ +LRGNHES+  T VY
Sbjct:   30 TLCEKAKEILTKESNV-------QEVRCPVTVCGDVHGQFHDLMELFRIGG-KSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVY 127
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP2AB_PIG (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform (Fragment) OS=Sus scrofa GN=PPP2CB PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:  434 TLVLTASKILHKEPNCVVIDDFDQDSR--VVVVGDVHGQLHDVLFLLRDAGFPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            TL   A +IL KE N        Q+ R  V V GDVHGQ HD++ L R  G  S +  ++F GDYVDRG + +ET  LL+A KV  P R+ +LRGNHES+  T VY
Sbjct:   14 TLCEKAKEILTKESNV-------QEVRCPVTVCGDVHGQFHDLMELFRIGG-KSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVY 111
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP2AB_MOUSE (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Mus musculus GN=Ppp2cb PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:  434 TLVLTASKILHKEPNCVVIDDFDQDSR--VVVVGDVHGQLHDVLFLLRDAGFPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            TL   A +IL KE N        Q+ R  V V GDVHGQ HD++ L R  G  S +  ++F GDYVDRG + +ET  LL+A KV  P R+ +LRGNHES+  T VY
Sbjct:   30 TLCEKAKEILTKESNV-------QEVRCPVTVCGDVHGQFHDLMELFRIGG-KSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVY 127
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP2AB_HUMAN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Homo sapiens GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:  434 TLVLTASKILHKEPNCVVIDDFDQDSR--VVVVGDVHGQLHDVLFLLRDAGFPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            TL   A +IL KE N        Q+ R  V V GDVHGQ HD++ L R  G  S +  ++F GDYVDRG + +ET  LL+A KV  P R+ +LRGNHES+  T VY
Sbjct:   30 TLCEKAKEILTKESNV-------QEVRCPVTVCGDVHGQFHDLMELFRIGG-KSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVY 127
[Close]
BLAST of CN189174 vs. ExPASy Swiss-Prot
Match: PP2AB_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Bos taurus GN=PPP2CB PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:  434 TLVLTASKILHKEPNCVVIDDFDQDSR--VVVVGDVHGQLHDVLFLLRDAGFPSKNCFFVFNGDYVDRGAWGLETFLLLLAWKVFLPHRVYLLRGNHESKNCTSVY 745
            TL   A +IL KE N        Q+ R  V V GDVHGQ HD++ L R  G  S +  ++F GDYVDRG + +ET  LL+A KV  P R+ +LRGNHES+  T VY
Sbjct:   30 TLCEKAKEILTKESNV-------QEVRCPVTVCGDVHGQFHDLMELFRIGG-KSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVY 127
The following BLAST results are available for this feature:
BLAST of CN189174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PP4C_MOUSE9.697e-1648.08Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_HUMAN9.697e-1648.08Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_BOVIN9.697e-1648.08Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4CB_DANRE9.697e-1648.08Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2AB_RAT9.697e-1648.11Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_RABIT9.697e-1648.11Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_PIG9.697e-1648.11Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_MOUSE9.697e-1648.11Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_HUMAN9.697e-1648.11Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_BOVIN9.697e-1648.11Serine/threonine-protein phosphatase 2A catalytic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189174 ID=CN189174; Name=CN189174; organism=Citrus sinensis; type=EST; length=747bp
GACGATTTCTTGTCAATTTCTGGTCACTCTTTTTTGGTTACTGCTTGTAG
ATTTCTTTAAGTCTTAGACATGTAAGTAAAGTAAACTCAAATTCTGTAGA
TTGATTTGTGTTTTTATTTGGTTGTATTTATGTTGTAGAAACTAAGGGGA
AAATAAAAATAAAATGCCAAATAAAAAGGAGTCGGACACCACCGTTTCTT
CTCTTCCATCAGATGAATCCAACCCCACCATTTCATCCACCATTGCCTCT
ACTGAGTACTCTAAAGGAAATAAACCTCTATCATCAGCACCGGTTCAGAT
CCCAATCTCATATCCTGAAGATGGGATGCTCACAGTTGAATGGATCCAAG
ATCTTACGTTGACTTTCGACTGGTCTTCCAGAAATCTTCCACCCTCCGAG
TTTCCTTCTGTGTTTCCTGTTGATGTATTTGACACTTTGGTGTTGACTGC
TTCCAAGATCCTTCATAAAGAGCCCAATTGTGTCGTAATTGATGACTTTG
ACCAGGATTCAAGAGTTGTAGTGGTTGGAGACGTGCATGGGCAGTTGCAC
GACGTTCTTTTTCTCTTGAGAGATGCTGGATTTCCTTCTAAAAACTGCTT
CTTTGTCTTTAATGGAGATTACGTTGATAGAGGAGCTTGGGGTCTTGAAA
CCTTCTTGCTTTTACTAGCATGGAAAGTCTTTTTGCCACACAGAGTATAT
CTGCTTCGCGGGAATCATGAATCTAAGAATTGTACGTCTGTTTATGG
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