CX676018

Overview
NameCX676018
Unique NameCX676018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_PSEF5 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.935e-17
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = -2
Query:  180 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 467
            +G+YN    DG Y+C  C   L+ S  KFDSGCGWP+FYE +  +     R       RTE+ CA C  HLGHVF       PT  R+C+NSV +  +P
Sbjct:   33 SGKYNGTKTDGVYHCICCNEPLFDSKAKFDSGCGWPSFYEPIADSAMVEIRDMSHGMIRTEVVCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_TERTT (Peptide methionine sulfoxide reductase msrB OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.036e-16
Identity = 48/97 (49.48%), Postives = 57/97 (58.76%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPD--GRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            +G+Y      G Y C  C T L+KS+ KFD+GCGWP+F+E L  G I    D      RTEI C ACG HLGHVF       PT  R+CVNS SI+F
Sbjct:   34 SGKYVDTTEAGTYLCRCCNTPLFKSLAKFDAGCGWPSFFEPLEKGVITEEMDTSLGMVRTEIMCEACGCHLGHVFTDG--PQPTGLRYCVNSASIQF 128          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPF (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas fluorescens (strain Pf0-1) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.036e-16
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = -2
Query:  180 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 467
            +G+YN    DG Y+C  C   L+ S TKFDSGCGWP+FY  +   A+    D      RTE+ CA C  HLGHVF       PT  R+C+NSV +  +P
Sbjct:   33 SGKYNATKTDGVYHCICCNEPLFDSKTKFDSGCGWPSFYAPIGDNAMTEIRDTSHGMIRTEVKCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_PSEA7 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas aeruginosa (strain PA7) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.036e-16
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = -2
Query:  180 HLC*IMHRPRG-TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIP 500
            H+C +    R  +GEY+     G Y+C  CGTAL+ S  K+DSG GWP++++ + G   R  D       R E+ C  C  HLGHVF       PT  R+C+NS S+K +P
Sbjct:   21 HICRLGGTERAFSGEYHATKTPGVYHCTCCGTALFDSDAKYDSGSGWPSYFQPVDGEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDG--PRPTGLRYCINSASLKLVP 129          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_CHRSD (Peptide methionine sulfoxide reductase msrB OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.353e-16
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = -2
Query:  174 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGA-INRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 467
            TG+Y      G Y+C  CG  L+++  KFD+GCGWP+F   L  A I    D     RR E+TC  C  HLGHVF  +G +  T  R+C+NSVS+ F PG+
Sbjct:   34 TGDYQVSDEQGIYHCVCCGAPLFENEHKFDAGCGWPSFDRPLADASIEEHLDTSHGMRRIEVTCRRCDSHLGHVFP-DGPQDTTGLRYCINSVSLDFHPGE 133          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURPS (Peptide methionine sulfoxide reductase msrB OS=Burkholderia pseudomallei GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.353e-16
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  186 PRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 476
            P  TGEY      G Y+C  CGTAL++S  KF SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   38 PPFTGEYTDTEDAGIYHCVVCGTALFESGAKFHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAALNF 136          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURMS (Peptide methionine sulfoxide reductase msrB OS=Burkholderia mallei (strain SAVP1) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.353e-16
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  186 PRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 476
            P  TGEY      G Y+C  CGTAL++S  KF SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   38 PPFTGEYTDTEDAGIYHCVVCGTALFESGAKFHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAALNF 136          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURMA (Peptide methionine sulfoxide reductase msrB OS=Burkholderia mallei GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.353e-16
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  186 PRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 476
            P  TGEY      G Y+C  CGTAL++S  KF SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   38 PPFTGEYTDTEDAGIYHCVVCGTALFESGAKFHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAALNF 136          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURM9 (Peptide methionine sulfoxide reductase msrB OS=Burkholderia mallei (strain NCTC 10229) GN=msrB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.353e-16
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  186 PRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 476
            P  TGEY      G Y+C  CGTAL++S  KF SGCGWP++++ + G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   38 PPFTGEYTDTEDAGIYHCVVCGTALFESGAKFHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAALNF 136          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_DECAR (Peptide methionine sulfoxide reductase msrB OS=Dechloromonas aromatica (strain RCB) GN=msrB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.768e-16
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  189 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFY-EGLPGAINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 467
            TG+Y   + DG Y C  CG  L++S TKFDSGCGWP+F+       I+   D      RTE+TC  CG HLGHVF  +    PT  R+C+NS S+K
Sbjct:   33 TGKYWDTHDDGTYRCICCGAPLFRSETKFDSGCGWPSFHTPNDEKLIDEHVDQSFGMIRTEVTCHDCGAHLGHVF--DDGPAPTGLRYCINSASLK 126          
The following BLAST results are available for this feature:
BLAST of CX676018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
MSRB_PSEF57.935e-1743.43Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_TERTT1.036e-1649.48Peptide methionine sulfoxide reductase msrB OS=Ter... [more]
MSRB_PSEPF1.036e-1644.44Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEA71.036e-1639.64Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_CHRSD1.353e-1644.55Peptide methionine sulfoxide reductase msrB OS=Chr... [more]
MSRB_BURPS1.353e-1643.00Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURMS1.353e-1643.00Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURMA1.353e-1643.00Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURM91.353e-1643.00Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_DECAR1.768e-1646.88Peptide methionine sulfoxide reductase msrB OS=Dec... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66D11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D11-H22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676018 ID=CX676018; Name=CX676018; organism=Citrus sinensis; type=EST; length=825bp
TTTTTTTTTTGGTTTATACTATGGCATAGGCTAATATTGGCCGCGTAATA
ATTATACAAACAACACCATGTCTAGGACATTAAAGCCAAAAACAATTGGC
AGAAGTGACAAACAGTCAAATCTTATTCAACAACCCCATGACAGTCTTAC
ATTCTTCATGATGAAGCAGGAGCATCACCTGGAATAAACTTAATTGAAAC
ACTATTGACACAGTGGCGTTCATCTGTAGGCGTTTTGAATCCCTCCCCTT
TGAAGACGTGACCCAAGTGACCCCCGCAAGCAGCACAAGTTATCTCGGTT
CTCCTTCCATCAGGATCAGGGGAGCGATTTATGGCTCCAGGAAGACCTTC
ATAGAAAGCTGGCCACCCACATCCAGAATCGAATTTGGTAACAGACTTGT
AAAGCGCAGTTCCACAGCCAGCACAGTTGTAAAACCCATCCGCATACAAC
TTGTTGTACTCCCCAGTTCCTCGCGGCCTGTGCATTATTTAGCATAAATG
GGCAGATTGACACTGAAAACAAAATTCAAAACTTGCTTTCCGTATGTGTA
TACATAAGTGAAGTTGTATCATCTAGATTTATGAGTTCTAAAGTTTTATT
AAATAAGAAATAGTTTATCCATTAATATTATAAGTTACATGTTCCAAACA
GTTTTGGATATAATGTATTATGTACAAAACTGTAAAACTGGCAACGTATT
AACTATTCTATATACTCTAAAACCCCATATAATCAGTAATTAACTTGAAA
TTGAATTGATGATGAATCCAATGCGTATAACGATTGCATCCATTTTTAAA
GGGGGGGAAAAAATCAAGAAAGCCT
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