CX676018

Overview
NameCX676018
Unique NameCX676018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_ECO24 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 45/104 (43.27%), Postives = 55/104 (52.88%), Query Frame = -2
Query:  174 PRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 476
            P  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:   29 PPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_ALTMD (Peptide methionine sulfoxide reductase msrB OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=msrB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  186 DGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 440
            DG Y C  C   L+ S TKFD+GCGWP+FY+ L  G ++   D     RR EI C  CG HLGHVF       PT +R+CVNS+S+ F
Sbjct:   47 DGLYVCKCCEAPLFPSDTKFDAGCGWPSFYKQLDDGNVDYREDVSHGMRRVEIFCKQCGSHLGHVFPDG--PAPTGQRYCVNSLSMTF 132          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_ECO81 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O81 (strain ED1a) GN=msrB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 45/104 (43.27%), Postives = 55/104 (52.88%), Query Frame = -2
Query:  174 PRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 476
            P  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  HLGHVF       PT ER+CVNS S++F  G+
Sbjct:   29 PPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PHPTGERYCVNSASLRFTDGE 130          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURTA (Peptide methionine sulfoxide reductase msrB OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=msrB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            TGEY      G Y+C  CGTAL++S  K+ SGCGWP++++ +    I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   41 TGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDAEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSAALNF 136          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: YL56_CAEEL (Uncharacterized protein F44E2.6 OS=Caenorhabditis elegans GN=F44E2.6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYE--GLPGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            TG +N  +  G Y C  CG+ L+ S  KF +GCGWPAF E  G    I R  D      RTE+ C  C  HLGHVF  +G K  T ER+C+NSV + F
Sbjct:   52 TGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVF-NDGPKETTGERYCINSVCMAF 148          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_PASMU (Peptide methionine sulfoxide reductase msrB OS=Pasteurella multocida GN=msrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPD--PDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            TG+       G Y C  C + L+ S TKFD+GCGWP+F++ + P AI    D      RTEI C  C  HLGHVF  E    PT  R+CVNSVS+ F
Sbjct:   25 TGKLLDQQKKGLYRCVVCHSPLFVSDTKFDAGCGWPSFFQAISPEAIRYLDDYTLSRPRTEIRCGQCDAHLGHVF--EDGPPPTGLRYCVNSVSMAF 119          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURVG (Peptide methionine sulfoxide reductase msrB OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=msrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            TGEY      G Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   41 TGEYTDTEDAGIYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKIDRSHGMVRVEVRCNHCGAHLGHVFE-DGPRDQTGLRYCINSAALNF 136          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURCM (Peptide methionine sulfoxide reductase msrB OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=msrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI--NRSPDPDGR-RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            TGEY      G Y C  C T L++S  KF SGCGWP++++ L G +   +     G  R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   41 TGEYTDTEDAGIYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKIDRTHGMVRVEVRCNHCGAHLGHVFE-DGPRDKTGLRYCINSAALNF 136          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURCH (Peptide methionine sulfoxide reductase msrB OS=Burkholderia cenocepacia (strain HI2424) GN=msrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            TGEY      G Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   41 TGEYTDTEDAGIYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKVDYSHGMVRVEVRCNNCGAHLGHVFE-DGPRDKTGLRYCINSAALNF 136          
BLAST of CX676018 vs. ExPASy Swiss-Prot
Match: MSRB_BURCC (Peptide methionine sulfoxide reductase msrB OS=Burkholderia cenocepacia (strain MC0-3) GN=msrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = -2
Query:  186 TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKF 467
            TGEY      G Y C  C T L++S  KF SGCGWP++++ L G  I+   D      R E+ C  CG HLGHVF+ +G +  T  R+C+NS ++ F
Sbjct:   41 TGEYTDTEDAGIYKCVVCSTPLFESGAKFHSGCGWPSYFKPLNGEVIDEKVDYSHGMVRVEVRCNHCGAHLGHVFE-DGPRDKTGLRYCINSAALNF 136          
The following BLAST results are available for this feature:
BLAST of CX676018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
MSRB_ECO241.954e-1543.27Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ALTMD1.954e-1548.86Peptide methionine sulfoxide reductase msrB OS=Alt... [more]
MSRB_ECO812.553e-1543.27Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_BURTA2.553e-1541.24Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
YL56_CAEEL5.686e-1545.92Uncharacterized protein F44E2.6 OS=Caenorhabditis ... [more]
MSRB_PASMU5.686e-1546.39Peptide methionine sulfoxide reductase msrB OS=Pas... [more]
MSRB_BURVG5.686e-1542.27Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURCM5.686e-1541.24Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURCH5.686e-1542.27Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_BURCC5.686e-1542.27Peptide methionine sulfoxide reductase msrB OS=Bur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66D11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D11-H22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676018 ID=CX676018; Name=CX676018; organism=Citrus sinensis; type=EST; length=825bp
TTTTTTTTTTGGTTTATACTATGGCATAGGCTAATATTGGCCGCGTAATA
ATTATACAAACAACACCATGTCTAGGACATTAAAGCCAAAAACAATTGGC
AGAAGTGACAAACAGTCAAATCTTATTCAACAACCCCATGACAGTCTTAC
ATTCTTCATGATGAAGCAGGAGCATCACCTGGAATAAACTTAATTGAAAC
ACTATTGACACAGTGGCGTTCATCTGTAGGCGTTTTGAATCCCTCCCCTT
TGAAGACGTGACCCAAGTGACCCCCGCAAGCAGCACAAGTTATCTCGGTT
CTCCTTCCATCAGGATCAGGGGAGCGATTTATGGCTCCAGGAAGACCTTC
ATAGAAAGCTGGCCACCCACATCCAGAATCGAATTTGGTAACAGACTTGT
AAAGCGCAGTTCCACAGCCAGCACAGTTGTAAAACCCATCCGCATACAAC
TTGTTGTACTCCCCAGTTCCTCGCGGCCTGTGCATTATTTAGCATAAATG
GGCAGATTGACACTGAAAACAAAATTCAAAACTTGCTTTCCGTATGTGTA
TACATAAGTGAAGTTGTATCATCTAGATTTATGAGTTCTAAAGTTTTATT
AAATAAGAAATAGTTTATCCATTAATATTATAAGTTACATGTTCCAAACA
GTTTTGGATATAATGTATTATGTACAAAACTGTAAAACTGGCAACGTATT
AACTATTCTATATACTCTAAAACCCCATATAATCAGTAATTAACTTGAAA
TTGAATTGATGATGAATCCAATGCGTATAACGATTGCATCCATTTTTAAA
GGGGGGGAAAAAATCAAGAAAGCCT
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