CX676006

Overview
NameCX676006
Unique NameCX676006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS5_MOUSE (Splicing factor, arginine/serine-rich 5 OS=Mus musculus GN=Sfrs5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.069e-16
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 551
            +++G L    R ++VE  F  YG I DIDLK      G+ FVEFED RDA+DA+   DG      R+ +E A        G                             +V  L S  SWQDLKD MR+AG+V F+   R +    G+V++ SY D+K AI KL
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKL 164          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SRP2_SCHPO (Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe GN=srp2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14
Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 554
            L+VG +P      ++ D F  YG I+D  L       G+ FVE ED RDA D +    G  F G R+ VE A G                              +V  L    SWQDLKD MR+AG+  F+   R+  G  G+V++++ +DM+ A+  L+
Sbjct:    6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM-----NGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARG----ERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.223e-12
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 296
            +YVG LP D   +E+E++F ++G I  +   +  RPPG+AFVE++D RDAEDA+R  DG    G R RVEL+ G
Sbjct:    5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELSTG 76          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 296
            +YVGNL       E+E  F KYGP+ ++   +   PPG+AFVEFED RDAEDA R  DG    G R+RVE++ G
Sbjct:   13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSG 84          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.306e-11
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 296
            +YVGNL       E+E  F  YGP+  +   I   PPG+AFVEFED RDAEDA+RG DG    G R+RVEL+ G
Sbjct:   42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 113          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.306e-11
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 296
            +YVGNL       E+E  F  YGP+  +   I   PPG+AFVEFED RDAEDA+RG DG    G R+RVEL+ G
Sbjct:   13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 84          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.306e-11
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 296
            +YVGNL       E+E  F  YGP+  +   I   PPG+AFVEFED RDAEDA+RG DG    G R+RVEL+ G
Sbjct:   13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 84          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS3_MOUSE (Splicing factor, arginine/serine-rich 3 OS=Mus musculus GN=Sfrs3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.711e-11
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 296
            +YVGNL  +    E+E  F  YGP+  +   +   PPG+AFVEFED RDA DA+R  DG    G R+RVEL++G
Sbjct:   12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS3_HUMAN (Splicing factor, arginine/serine-rich 3 OS=Homo sapiens GN=SFRS3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.711e-11
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 296
            +YVGNL  +    E+E  F  YGP+  +   +   PPG+AFVEFED RDA DA+R  DG    G R+RVEL++G
Sbjct:   12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83          
BLAST of CX676006 vs. ExPASy Swiss-Prot
Match: SFRS3_BOVIN (Splicing factor, arginine/serine-rich 3 OS=Bos taurus GN=SFRS3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.711e-11
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   75 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 296
            +YVGNL  +    E+E  F  YGP+  +   +   PPG+AFVEFED RDA DA+R  DG    G R+RVEL++G
Sbjct:   12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83          
The following BLAST results are available for this feature:
BLAST of CX676006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SFRS5_MOUSE1.069e-1635.76Splicing factor, arginine/serine-rich 5 OS=Mus mus... [more]
SRP2_SCHPO6.485e-1431.88Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyc... [more]
RSP6_CAEEL1.223e-1248.65Probable splicing factor, arginine/serine-rich 6 O... [more]
RBP1_DROME2.086e-1250.00RNA-binding protein 1 OS=Drosophila melanogaster G... [more]
SFRS7_MOUSE2.306e-1152.70Splicing factor, arginine/serine-rich 7 OS=Mus mus... [more]
SFRS7_HUMAN2.306e-1152.70Splicing factor, arginine/serine-rich 7 OS=Homo sa... [more]
SFRS7_BOVIN2.306e-1152.70Splicing factor, arginine/serine-rich 7 OS=Bos tau... [more]
SFRS3_MOUSE6.711e-1148.65Splicing factor, arginine/serine-rich 3 OS=Mus mus... [more]
SFRS3_HUMAN6.711e-1148.65Splicing factor, arginine/serine-rich 3 OS=Homo sa... [more]
SFRS3_BOVIN6.711e-1148.65Splicing factor, arginine/serine-rich 3 OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66D04-H8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676006 ID=CX676006; Name=CX676006; organism=Citrus sinensis; type=EST; length=840bp
GAGATTTCCACCTCTGAAATTCTAATTTCCGATCAGAAAAAAAAACAAAA
ATGAGCAGCCGATCGAGCCGTACTCTTTACGTCGGAAACCTCCCGGGGGA
TACGAGAATGAGGGAAGTGGAAGACTTGTTCTACAAGTATGGGCCTATTG
TTGATATTGACTTGAAGATCCCACCAAGACCTCCGGGTTACGCCTTTGTT
GAGTTTGAGGACTATCGGGACGCTGAGGATGCAATTCGCGGTCGAGATGG
CTATAACTTTGATGGGTATCGATTGCGAGTTGAACTAGCACATGGGGGTC
GAAGACATTCGTCGTCGGTGGATCGTTATAGCAGTTACAGCAGTGGAGGT
AGCCGTGGAGTCTCCAGGCGCTCTGACTATCGTGTTTTGGTGACTGGATT
ACCTTCATCTGCTTCATGGCAAGACCTCAAGGATCACATGCGTCGTGCTG
GGGATGTCTGTTTTTCTCAAGTGTTTCGCGATCGTGGCGGTATGACGGGA
ATTGTGGATTACACTAGCTATGATGATATGAAATATGCTATAAGGAAACT
TGATCGCTCGGAGTTCCGGAATGCGTTTTCCCGGTCCTATGTGCGGGTGA
GGGAGTATGATTCAAGACGGAGCTATTCTAGAAGTCCAAGTCGTAGTCCT
TATTATTCGAGGAGCCGAAGCCGGAGTCCTTATTATTCGAGGAGCCGAAG
TCCTAGCCGCAGCTGGAGCTATAGTCCCAGGAGCAGGAGCTATTCTCCCA
GGGGAAAATATTCACGTCGGTCTCCATCTCTGTCTCCTGCTAGGTCTGCT
TCTCAGCGTTCACCCTCGGGATCACCTCCTCGGTCTTTTT
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