FC921846

Overview
NameFC921846
Unique NameFC921846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.169e-13
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW +PV+W L GL+T Q GDL+  + + DG  T   V  F+ D++ F+ DF+ VV+ M   +  +F  VFA AIK +NFQRR
Sbjct: 1370 YWANPVSWTLYGLLTSQFGDLDQPLLLADGITTTTAV-DFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1450          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.169e-13
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YWL PVAW L GL+  Q GD+     + D N   M+VKQFI + Y +++ F+ VV+ M++++  +F  +FA  IK+ NFQ+R
Sbjct: 1347 YWLCPVAWTLYGLIASQFGDITE--PMADSN---MSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.374e-12
Identity = 29/82 (35.37%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YWL P+AW + GL+  Q GDLE ++ +P  +N   T+  ++  ++ + + F+PVV+ + +++   F F++A  IK +NFQ R
Sbjct: 1421 YWLCPLAWTVYGLIVTQYGDLEQIISVPGQSN--QTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.795e-12
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW+ PVAW + GL+  Q GD+E  +++P G     T+K +IE++Y +  DF+  ++ + + +   F F+FA+ I+ +NFQ+R
Sbjct: 1336 YWICPVAWTVYGLIVSQYGDVEDTIKVP-GMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.344e-12
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YW  PVAW L GLV  Q G+    +   D      TVK F+     F+ DF+PVV +M +V+  +F  +FA++IK +NFQRR
Sbjct: 1365 YWACPVAWTLYGLVVSQFGEYTDTMSDVDE-----TVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.999e-12
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 YWLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            YWL PVAW + GL+  Q GD+E  + +P    +   V+ FI+D + +  DF+ VV+ +   +   F F +AY+I+ +NFQ+R
Sbjct: 1430 YWLCPVAWTVYGLIVSQYGDVEDFITVP--GQSDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509          
BLAST of FC921846 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.774e-11
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    5 WLSPVAWNLCGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 247
            W+ PVAW L GLV  Q GD+  +  + DG      VK F+E+ +DFK  ++ VV+++ + +  +F F+F +AI  +NFQ+R
Sbjct: 1390 WICPVAWTLYGLVASQFGDI--MTPMDDGT----PVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
The following BLAST results are available for this feature:
BLAST of FC921846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PDR6_ORYSJ6.169e-1345.12Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
AB40G_ARATH6.169e-1342.68ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR12_ORYSJ1.374e-1235.37Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
AB29G_ARATH1.795e-1236.59ABC transporter G family member 29 OS=Arabidopsis ... [more]
TUR2_SPIPO2.344e-1242.68Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR15_ORYSJ3.999e-1237.80Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
PDR2_ORYSJ5.774e-1139.51Probable pleiotropic drug resistance protein 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06053A11T7 RindPdigS Citrus sinensis cDNA clone C06053A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921846 ID=FC921846; Name=FC921846; organism=Citrus sinensis; type=EST; length=328bp
CTACTGGCTTTCTCCGGTGGCTTGGAATCTGTGTGGCCTTGTTACTTGTC
AAGTTGGTGACTTAGAGTCACTTGTGGAGATTCCTGATGGTAATAATACT
AAAATGACAGTGAAGCAATTCATCGAAGATAATTATGATTTCAAGAAAGA
TTTCATTCCTGTCGTTAGTATCATGCACATTGTCTGGATGGCCGTGTTCT
TGTTTGTGTTTGCCTATGCCATCAAGGCCATCAACTTCCAAAGGAGATAA
ACCAGCTCAAATCTTAAGAATGATAGACCTAAGTGAGCATGTGGGAAACA
AAAGGTTACCACATTTTTTTTTTCTTTT
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