CX675998

Overview
NameCX675998
Unique NameCX675998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.034e-13
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = -3 
Query:  273 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVL 458
            GTKL+ RD + +  DHP A  +  AQG EL K IGA A IE SSKTQQN+KAVFD AI+VVL
Sbjct:  118 GTKLDLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQQNIKAVFDTAIKVVL 179
[Close]
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 41/81 (50.62%), Postives = 48/81 (59.26%), Query Frame = -3 
Query:  216 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVLHXXXXXXXXXXXXXPCSIL 458
            GTK + RD+ QF  ++PGA  + P QG EL K IGA A IE SSK Q NVKAVFD AI+VVLH              C +L
Sbjct:  129 GTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQMNVKAVFDEAIKVVLHPPSKTKKRKRKIGLCHVL 209
[Close]
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = -3 
Query:  273 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVL 458
            GTKL+ R+D+ +  DHP +  +   QG EL KLIGA A IE SSKTQ+N+KAVFD AI+VVL
Sbjct:  121 GTKLDLREDRAYLADHPASSIITTEQGEELRKLIGAVAYIECSSKTQRNIKAVFDTAIKVVL 182
[Close]
BLAST of CX675998 vs. ExPASy Swiss-Prot
Match: RAC7_ARATH (Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = -3 
Query:  273 GTKLNFRDDKQFSIDHPGAVPLGPAQGGELGKLIGAPASIEPSSKTQQNVKAVFDAAIRVVL 458
            GTKL+ RDDK +  DH   +     QG EL K IGA A IE SSKTQQNVKAVFD AI+VVL
Sbjct:  117 GTKLDLRDDKGYLADHTNVIT--STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 176
The following BLAST results are available for this feature:
BLAST of CX675998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RAC2_ORYSJ2.034e-1362.90Rac-like GTP-binding protein 2 OS=Oryza sativa sub... [more]
RAC9_ARATH1.009e-1250.62Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAC1_ORYSJ1.318e-1259.68Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RAC7_ARATH1.116e-1162.90Rac-like GTP-binding protein ARAC7 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_66C08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66C08-F16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675998 ID=CX675998; Name=CX675998; organism=Citrus sinensis; type=EST; length=460bp
TTTTTTTTTTTTTTTTTGGGCAACAATGTAATGCATTTCAACAATTAAAG
CCCATCACAACAATTCCCACAAAACAATACAAAACCACCTGAAGATTCAA
AGAGAGATCCTCACAGTTTGGCAATTGAGATTTCTTCCAGAGCAAAGGAA
GAAAGATGAGGGAAAATTTGAGAAAGGACAGAGGGTCATAATCTCTTTAC
ACCTAATTTCAATCACAATATGGAGCAGGGCTTTTGTGCTTTATTCTTTT
TCTTCTTCGGCTTTGGGGGGTGGAGGACAACTCTGATGGCTGCATCAAAT
ACCGCCTTCACATTCTGCTGGGTTTTTGAACTGGGTTCAATGGAAGCAGG
GGCACCAATCAACTTCCCCAGCTCCCCCCCCTGAGCTGGACCAAGGGGCA
CGGCACCTGGATGATCAATGGAAAACTGCTTATCATCCCGAAAATTAAGC
TTTGTTCCAA
back to top