FC921845
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP20_PIG (Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12 Identity = 38/78 (48.72%), Postives = 41/78 (52.56%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVI 256 EV A WS A L+F R ADI I F TGDHGD PFDGP GTLAHAF+P G H D E W + Sbjct: 137 EVDKAMEMALQAWSSAVPLSFVRVNA-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM 213
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP1_RABIT (Interstitial collagenase OS=Oryctolagus cuniculus GN=MMP1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12 Identity = 40/85 (47.06%), Postives = 43/85 (50.59%), Query Frame = 2 Query: 5 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250 + PD D V N AF WS T LTFT+ ADI I F GDH D PFDGP G LAHAF P G H D D+ W Sbjct: 120 YTPDLSRAD-VDNAIEKAFQLWSNVTPLTFTKVSK-GQADIMISFVRGDHRDNSPFDGPEGQLAHAFQPGLGIGGDVHFDEDDRW 202
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP8_RAT (Neutrophil collagenase OS=Rattus norvegicus GN=Mmp8 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12 Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250 EVK AF WS ++LTFT T + ADI I F + DHGD PFDGP G LAHAF P G H D +E W Sbjct: 129 EVKTEIEKAFKIWSVPSTLTFTET-LEGEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGRGIGGDAHFDSEETW 203
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP8_MOUSE (Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12 Identity = 38/76 (50.00%), Postives = 42/76 (55.26%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250 EVK AF WS A+ LTFT + ADI I F + DHGD PFDGP G LAHAF P G H D +E W Sbjct: 128 EVKTAIEKAFHVWSVASPLTFTEI-LQGEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDSEETW 202
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_HUMAN (Collagenase 3 OS=Homo sapiens GN=MMP13 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.358e-12 Identity = 42/82 (51.22%), Postives = 47/82 (57.32%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRT--GVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262 EV+ F AF WS+ T L FTR G+ ADI I F +HGD PFDGP G LAHAF P PN G H D DE W +S Sbjct: 133 EVEKAFKKAFKVWSDVTPLNFTRLHDGI---ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 211
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP20_BOVIN (Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12 Identity = 38/78 (48.72%), Postives = 40/78 (51.28%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVI 256 EV A WS A L F R ADI I F TGDHGD PFDGP GTLAHAF+P G H D E W + Sbjct: 135 EVDRAMEMALRAWSSAVPLNFVRINA-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM 211
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP1_HUMAN (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12 Identity = 40/85 (47.06%), Postives = 43/85 (50.59%), Query Frame = 2 Query: 5 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250 + PD D V + AF WS T LTFT+ ADI I F GDH D PFDGP G LAHAF P G H D DE W Sbjct: 121 YTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERW 203
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP20_MOUSE (Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12 Identity = 38/78 (48.72%), Postives = 40/78 (51.28%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVI 256 EV A WS A L F R ADI I F TGDHGD PFDGP GTLAHAF+P G H D E W + Sbjct: 136 EVDKAIQMALHAWSTAVPLNFVRINS-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM 212
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: HE_PARLI (Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12 Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 2 Query: 29 DEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENW 250 ++VK+ AF W + + L+F T+ DIRI F + DHGDG FDG G LAHAF P NG H D E W Sbjct: 194 NDVKDEIRRAFRVWDDVSGLSFREVPDTTSVDIRIKFGSYDHGDGISFDGRGGVLAHAFLPRNGDAHFDDSETW 267
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP1_BOVIN (Interstitial collagenase OS=Bos taurus GN=MMP1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12 Identity = 40/85 (47.06%), Postives = 42/85 (49.41%), Query Frame = 2 Query: 5 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250 + PD D V AF WS T LTFT+ ADI I F GDH D PFDGP G LAHAF P G H D DE W Sbjct: 121 YTPDLSRAD-VDQAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGAGIGGDAHFDDDEWW 203 The following BLAST results are available for this feature:
BLAST of FC921845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921845 ID=FC921845; Name=FC921845; organism=Citrus sinensis; type=EST; length=263bpback to top |