FC921845

Overview
NameFC921845
Unique NameFC921845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP20_PIG (Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12
Identity = 38/78 (48.72%), Postives = 41/78 (52.56%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVI 256
            EV      A   WS A  L+F R      ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W +
Sbjct:  137 EVDKAMEMALQAWSSAVPLSFVRVNA-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM 213          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP1_RABIT (Interstitial collagenase OS=Oryctolagus cuniculus GN=MMP1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12
Identity = 40/85 (47.06%), Postives = 43/85 (50.59%), Query Frame = 2
Query:    5 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250
            + PD    D V N    AF  WS  T LTFT+      ADI I F  GDH D  PFDGP G LAHAF P     G  H D D+ W
Sbjct:  120 YTPDLSRAD-VDNAIEKAFQLWSNVTPLTFTKVSK-GQADIMISFVRGDHRDNSPFDGPEGQLAHAFQPGLGIGGDVHFDEDDRW 202          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP8_RAT (Neutrophil collagenase OS=Rattus norvegicus GN=Mmp8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250
            EVK     AF  WS  ++LTFT T +   ADI I F + DHGD  PFDGP G LAHAF P     G  H D +E W
Sbjct:  129 EVKTEIEKAFKIWSVPSTLTFTET-LEGEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGRGIGGDAHFDSEETW 203          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP8_MOUSE (Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 38/76 (50.00%), Postives = 42/76 (55.26%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250
            EVK     AF  WS A+ LTFT   +   ADI I F + DHGD  PFDGP G LAHAF P     G  H D +E W
Sbjct:  128 EVKTAIEKAFHVWSVASPLTFTEI-LQGEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDSEETW 202          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_HUMAN (Collagenase 3 OS=Homo sapiens GN=MMP13 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.358e-12
Identity = 42/82 (51.22%), Postives = 47/82 (57.32%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRT--GVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262
            EV+  F  AF  WS+ T L FTR   G+   ADI I F   +HGD  PFDGP G LAHAF P PN  G  H D DE W  +S
Sbjct:  133 EVEKAFKKAFKVWSDVTPLNFTRLHDGI---ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 211          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP20_BOVIN (Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 38/78 (48.72%), Postives = 40/78 (51.28%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVI 256
            EV      A   WS A  L F R      ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W +
Sbjct:  135 EVDRAMEMALRAWSSAVPLNFVRINA-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM 211          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP1_HUMAN (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 40/85 (47.06%), Postives = 43/85 (50.59%), Query Frame = 2
Query:    5 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250
            + PD    D V +    AF  WS  T LTFT+      ADI I F  GDH D  PFDGP G LAHAF P     G  H D DE W
Sbjct:  121 YTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERW 203          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP20_MOUSE (Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 38/78 (48.72%), Postives = 40/78 (51.28%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVI 256
            EV      A   WS A  L F R      ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W +
Sbjct:  136 EVDKAIQMALHAWSTAVPLNFVRINS-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM 212          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: HE_PARLI (Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 2
Query:   29 DEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENW 250
            ++VK+    AF  W + + L+F      T+ DIRI F + DHGDG  FDG  G LAHAF P NG  H D  E W
Sbjct:  194 NDVKDEIRRAFRVWDDVSGLSFREVPDTTSVDIRIKFGSYDHGDGISFDGRGGVLAHAFLPRNGDAHFDDSETW 267          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP1_BOVIN (Interstitial collagenase OS=Bos taurus GN=MMP1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 40/85 (47.06%), Postives = 42/85 (49.41%), Query Frame = 2
Query:    5 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 250
            + PD    D V      AF  WS  T LTFT+      ADI I F  GDH D  PFDGP G LAHAF P     G  H D DE W
Sbjct:  121 YTPDLSRAD-VDQAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGAGIGGDAHFDDDEWW 203          
The following BLAST results are available for this feature:
BLAST of FC921845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MMP20_PIG1.382e-1248.72Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20... [more]
MMP1_RABIT1.382e-1247.06Interstitial collagenase OS=Oryctolagus cuniculus ... [more]
MMP8_RAT1.805e-1250.00Neutrophil collagenase OS=Rattus norvegicus GN=Mmp... [more]
MMP8_MOUSE1.805e-1250.00Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=... [more]
MMP13_HUMAN2.358e-1251.22Collagenase 3 OS=Homo sapiens GN=MMP13 PE=1 SV=1[more]
MMP20_BOVIN4.021e-1248.72Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20... [more]
MMP1_HUMAN4.021e-1247.06Interstitial collagenase OS=Homo sapiens GN=MMP1 P... [more]
MMP20_MOUSE6.859e-1248.72Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp... [more]
HE_PARLI6.859e-1245.95Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1[more]
MMP1_BOVIN8.959e-1247.06Interstitial collagenase OS=Bos taurus GN=MMP1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06053A10T7 RindPdigS Citrus sinensis cDNA clone C06053A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921845 ID=FC921845; Name=FC921845; organism=Citrus sinensis; type=EST; length=263bp
CGCGTTCTTGCCCGATAACCAATTGACTGACGAAGTCAAGAACGTATTTG
CGACAGCCTTCGACCGCTGGTCGGAAGCGACGTCGTTGACTTTCACTCGG
ACGGGCGTTTACACGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGA
TCACGGTGACGGCGAGCCATTTGATGGGCCTATGGGCACGCTGGCGCACG
CCTTCTCGCCACCAAATGGACGGTTCCATTTAGACGGCGACGAGAACTGG
GTAATCACGAGTG
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