CN189103

Overview
NameCN189103
Unique NameCN189103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.452e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPER+YSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  312 DRMSKEITALAPSSMKIKVVAPPERRYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM+KEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMTKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EY+ESGPSIVHRKCF
Sbjct:   97 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF 161
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_NEUCR (Actin OS=Neurospora crassa GN=act-1 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQAMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_GAEGA (Actin OS=Gaeumannomyces graminis var. avenae GN=ACT PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_BOTFU (Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_AJECG (Actin OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=HCBG_08711 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTG_PENCH (Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTG_EMENI (Actin, gamma OS=Emericella nidulans GN=acnA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of CN189103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
ACT2_PEA2.452e-2995.38Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT_VOLCA3.202e-2993.85Actin OS=Volvox carteri PE=3 SV=1[more]
ACT_PINCO3.202e-2995.38Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]
ACT_NEUCR3.202e-2992.31Actin OS=Neurospora crassa GN=act-1 PE=3 SV=2[more]
ACT_MESVI3.202e-2995.38Actin OS=Mesostigma viride PE=3 SV=1[more]
ACT_GAEGA3.202e-2992.31Actin OS=Gaeumannomyces graminis var. avenae GN=AC... [more]
ACT_BOTFU3.202e-2992.31Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1[more]
ACT_AJECG3.202e-2992.31Actin OS=Ajellomyces capsulata (strain ATCC 26029 ... [more]
ACTG_PENCH3.202e-2992.31Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=... [more]
ACTG_EMENI3.202e-2992.31Actin, gamma OS=Emericella nidulans GN=acnA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189103 ID=CN189103; Name=CN189103; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAATTTGAAATAAGACATTGATTCATCATTGAAA
GCTCTCAAACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCA
AGCTGACACTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGT
TCCTTTTGAGAGGGGGAGAAAAAAAAACCTTCAAATATGAAAATTTAGAA
AATGAAATAGAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACAT
CCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAAC
ACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGTACAGAAATAAGCCCC
CCTCAAACGCTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGC
CTCCTTCAATGGCCCCAACCTTAGCACTTCTCCATGTCAACCAACTTGAG
TTCGCGAAACGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCAC
CCATCAAGCACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGG
ACCAGACTCATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGC
TGAGGGATGCAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCT
GGTGGAGCCACGACCTTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGAT
TTCCTTGCTCATACGGTC
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