CN189103

Overview
NameCN189103
Unique NameCN189103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT5_TOBAC (Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -1 
Query:  587 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT5_SOLTU (Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -1 
Query:  587 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT4_TOBAC (Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -1 
Query:  587 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT3_SOLLC (Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -1 
Query:  587 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT2_SOLLC (Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -1 
Query:  587 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT1_SOLLC (Actin-41 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -1 
Query:  587 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 718
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTY_MOUSE (Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DR+  E+  LAP  +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTY_HUMAN (Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DR+  E+  LAP  +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTY_BOVIN (Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = -1 
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DR+  E+  LAP  +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376
[Close]
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = -1 
Query:  527 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            +R+ KE+  LAP +MK+KV+A P+RKY+VW GGS LA LSTF  MW++K +Y E G SIVHRKC
Sbjct:  315 ERLYKEMKDLAPQTMKVKVIASPDRKYAVWRGGSTLAKLSTFAGMWVTKEDYAEFGESIVHRKC 378
The following BLAST results are available for this feature:
BLAST of CN189103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
ACT5_TOBAC4.796e-17100.00Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT5_SOLTU4.796e-17100.00Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT4_TOBAC4.796e-17100.00Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT3_SOLLC4.796e-17100.00Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT2_SOLLC4.796e-17100.00Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT1_SOLLC4.796e-17100.00Actin-41 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACTY_MOUSE8.182e-1760.00Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=... [more]
ACTY_HUMAN8.182e-1760.00Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=... [more]
ACTY_BOVIN8.182e-1760.00Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1[more]
ACT_EUPCR1.069e-1660.94Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189103 ID=CN189103; Name=CN189103; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAATTTGAAATAAGACATTGATTCATCATTGAAA
GCTCTCAAACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCA
AGCTGACACTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGT
TCCTTTTGAGAGGGGGAGAAAAAAAAACCTTCAAATATGAAAATTTAGAA
AATGAAATAGAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACAT
CCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAAC
ACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGTACAGAAATAAGCCCC
CCTCAAACGCTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGC
CTCCTTCAATGGCCCCAACCTTAGCACTTCTCCATGTCAACCAACTTGAG
TTCGCGAAACGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCAC
CCATCAAGCACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGG
ACCAGACTCATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGC
TGAGGGATGCAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCT
GGTGGAGCCACGACCTTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGAT
TTCCTTGCTCATACGGTC
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