CN189103

Overview
NameCN189103
Unique NameCN189103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTT1_HUMAN (Actin-related protein T1 OS=Homo sapiens GN=ACTRT1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = -1
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            +R+ KE+  LA     IK+ A P+R +S WIG SI+ S+S+F+QMW++  ++ E G S+V R+CF
Sbjct:  312 ERLMKEVEQLASKGTPIKITASPDRCFSAWIGASIMTSMSSFKQMWVTSADFKEYGTSVVQRRCF 376          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTL9_BOVIN (Actin-like protein 9 OS=Bos taurus GN=ACTL9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  524 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 715
            R   E+    P    + V+A P R +SVWIGGSILASL TFQ  W+ + +Y+E GP IV+RKC+
Sbjct:  353 RFQTELLRNLPPEAHVVVMAQPTRNFSVWIGGSILASLRTFQSCWVLREQYEEQGPYIVYRKCY 416          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ARP4_USTMA (Actin-related protein 4 OS=Ustilago maydis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = -1
Query:  527 DRMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            DR+S E+   AP+  KIK+ +P    ER++S W+G SILASL TF Q+WISK EY+E G +IVH +C
Sbjct:  468 DRLSYELGVKAPNQ-KIKIHSPGNTTERRHSSWLGASILASLGTFHQLWISKQEYEEHGAAIVHARC 533          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT_CRAVI (Actin (Fragment) OS=Crassostrea virginica PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = -1
Query:  602 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 718
            DRM KE+T LAP +MKIKV+APPERKYSVWIGGSILASL
Sbjct:  228 DRMQKEVTTLAPPTMKIKVIAPPERKYSVWIGGSILASL 266          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ARP4_NEUCR (Actin-related protein 4 OS=Neurospora crassa GN=arp-4 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  527 DRMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            DR++ E+  + P  +KIK+ A     ER++  WIGGSILASL TF QMWIS+ EYDE+G  IV ++C
Sbjct:  403 DRLNHELAQMYPG-VKIKIHAAGLTTERRFGAWIGGSILASLGTFHQMWISRKEYDENGAGIVEKRC 468          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTL9_HUMAN (Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = -1
Query:  524 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 715
            R   E+    P+   + V A P R +SVWIGGSILASL  FQ  W+ + +Y+E GP IV+RKC+
Sbjct:  353 RFRAELLRALPAETHVVVAAQPTRNFSVWIGGSILASLRAFQSCWVLREQYEEQGPYIVYRKCY 416          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  527 DRMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            DR+++E+    P   ++++ A     ERK+  W+GGSILASL TF QMWISK EYDE GP+IV ++C
Sbjct:  400 DRLNQELMQSYPGP-RVRISASGNTAERKFGSWVGGSILASLGTFHQMWISKKEYDEHGPNIVEKRC 465          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACTT1_MOUSE (Actin-related protein T1 OS=Mus musculus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  524 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DR+ KE+  LA     IK+ A  +R YS WIGGS++ S++TF+QMW++  ++ E G  +V RKCF
Sbjct:  312 DRLLKELEDLAFEGTPIKITASSDRCYSAWIGGSVMTSMTTFKQMWVTAEDFKEYGAFVVQRKCF 376          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT29_DICDI (Putative actin-29 OS=Dictyostelium discoideum GN=act29 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = -1
Query:  524 DRMSKEITALAPSSMKIKVV---APPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 718
            DR+  E+  L+PSSMKIKVV         +  WIGGSI +SLSTF+Q  ISK EY E G  I+ RKCF
Sbjct:  320 DRIKNELINLSPSSMKIKVVENNTNENNSHLAWIGGSIFSSLSTFEQQSISKQEYMEYGSKIIQRKCF 387          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACL7B_BOVIN (Actin-like protein 7B OS=Bos taurus GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = -1
Query:  527 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E++E G + ++ KC
Sbjct:  355 ERFQRELSLLCPGDSPA-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGSAAIYSKC 417          
The following BLAST results are available for this feature:
BLAST of CN189103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
ACTT1_HUMAN2.724e-1244.62Actin-related protein T1 OS=Homo sapiens GN=ACTRT1... [more]
ACTL9_BOVIN2.724e-1250.00Actin-like protein 9 OS=Bos taurus GN=ACTL9 PE=2 S... [more]
ARP4_USTMA4.646e-1253.73Actin-related protein 4 OS=Ustilago maydis GN=ARP4... [more]
ACT_CRAVI4.646e-1284.62Actin (Fragment) OS=Crassostrea virginica PE=2 SV=... [more]
ARP4_NEUCR6.068e-1252.24Actin-related protein 4 OS=Neurospora crassa GN=ar... [more]
ACTL9_HUMAN6.068e-1248.44Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2... [more]
ARP4_ASPFU7.924e-1250.75Actin-related protein 4 OS=Aspergillus fumigatus G... [more]
ACTT1_MOUSE1.352e-1146.15Actin-related protein T1 OS=Mus musculus GN=Actrt1... [more]
ACT29_DICDI1.765e-1154.41Putative actin-29 OS=Dictyostelium discoideum GN=a... [more]
ACL7B_BOVIN1.765e-1150.00Actin-like protein 7B OS=Bos taurus GN=ACTL7B PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189103 ID=CN189103; Name=CN189103; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAATTTGAAATAAGACATTGATTCATCATTGAAA
GCTCTCAAACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCA
AGCTGACACTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGT
TCCTTTTGAGAGGGGGAGAAAAAAAAACCTTCAAATATGAAAATTTAGAA
AATGAAATAGAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACAT
CCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAAC
ACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGTACAGAAATAAGCCCC
CCTCAAACGCTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGC
CTCCTTCAATGGCCCCAACCTTAGCACTTCTCCATGTCAACCAACTTGAG
TTCGCGAAACGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCAC
CCATCAAGCACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGG
ACCAGACTCATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGC
TGAGGGATGCAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCT
GGTGGAGCCACGACCTTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGAT
TTCCTTGCTCATACGGTC
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