CN189103

Overview
NameCN189103
Unique NameCN189103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACL7B_RAT (Actin-like protein 7B OS=Rattus norvegicus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = -1
Query:  527 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E++E G + ++ KC
Sbjct:  355 ERFQRELSLLCPGDSPT-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGCAAIYSKC 417          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACL7B_MOUSE (Actin-like protein 7B OS=Mus musculus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = -1
Query:  527 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E++E G + ++ KC
Sbjct:  356 ERFQRELSLLCPGDSPT-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGCAAIYSKC 418          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACL7B_HUMAN (Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  527 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E++E G   ++ KC
Sbjct:  353 ERFQRELSLLCPGDSPA-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGSVAIYSKC 415          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACL7B_MACFA (Actin-like protein 7B OS=Macaca fascicularis GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = -1
Query:  527 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 718
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E+ E G   ++ KC
Sbjct:  353 ERFQRELSLLCPGDSPA-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFQERGSMAIYSKC 415          
BLAST of CN189103 vs. ExPASy Swiss-Prot
Match: ACT27_DICDI (Putative actin-27 OS=Dictyostelium discoideum GN=act27 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = -1
Query:  536 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH 715
            RM K +T LAPS+ +I + A P+RK SVWIGGSIL  +  FQ++ I K +YDE GPS V+
Sbjct:  296 RMYKGLTQLAPSTTEIVINAEPDRKNSVWIGGSILGLVPNFQELCIDKEDYDEYGPSFVN 355          
The following BLAST results are available for this feature:
BLAST of CN189103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
ACL7B_RAT3.011e-1150.00Actin-like protein 7B OS=Rattus norvegicus GN=Actl... [more]
ACL7B_MOUSE3.011e-1150.00Actin-like protein 7B OS=Mus musculus GN=Actl7b PE... [more]
ACL7B_HUMAN3.933e-1150.00Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE... [more]
ACL7B_MACFA5.136e-1150.00Actin-like protein 7B OS=Macaca fascicularis GN=AC... [more]
ACT27_DICDI6.708e-1155.00Putative actin-27 OS=Dictyostelium discoideum GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189103 ID=CN189103; Name=CN189103; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAATTTGAAATAAGACATTGATTCATCATTGAAA
GCTCTCAAACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCA
AGCTGACACTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGT
TCCTTTTGAGAGGGGGAGAAAAAAAAACCTTCAAATATGAAAATTTAGAA
AATGAAATAGAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACAT
CCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAAC
ACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGTACAGAAATAAGCCCC
CCTCAAACGCTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGC
CTCCTTCAATGGCCCCAACCTTAGCACTTCTCCATGTCAACCAACTTGAG
TTCGCGAAACGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCAC
CCATCAAGCACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGG
ACCAGACTCATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGC
TGAGGGATGCAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCT
GGTGGAGCCACGACCTTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGAT
TTCCTTGCTCATACGGTC
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