CX675988

Overview
NameCX675988
Unique NameCX675988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.945e-62
Identity = 112/195 (57.44%), Postives = 147/195 (75.38%), Query Frame = 3
Query:   51 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 635
            +++ + +  VAAQN + +  GAFTGE+SA  L++L + WVILGHSERR  L ES++F+  K  YAL  G+ VI C GE+ + R++G T+  V  Q  A+A++I++W NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:   52 QNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 236.884 bits (603), Expect = 1.038e-61
Identity = 110/190 (57.89%), Postives = 140/190 (73.68%), Query Frame = 3
Query:   60 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 629
            ++ D  V AQN + +K GA+TGE SA+ L++  I + + GHSERR +  ES++FV DK  +AL QGL V+AC+GETL +RE+  T+ VV  Q  AIA+K+ NW  +V+AYEPVWAIGTGK ATP QAQEVHAE+RKW  + + A VA   R+IYGGSVNG NCKE     D+DGFLVGGASLKPEF +I+
Sbjct:   55 VKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIV 244          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.355e-61
Identity = 115/174 (66.09%), Postives = 139/174 (79.89%), Query Frame = 3
Query:   51 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 572
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL++GLKVIAC+GETL++RE+G T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK ATP QAQEVH  LRKW  DNVSA+V+AS RI YGGSV  ANC+ELAA+PD
Sbjct:   33 RSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.360e-60
Identity = 112/197 (56.85%), Postives = 145/197 (73.60%), Query Frame = 3
Query:   51 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 635
            + V   +  VAAQN + +  GAFTGE+S + L   +I W ILGHSERR +L E+++F+  K   A+  GL+VI C+GETLE+RE+  T+ VV  Q  A A+++S   W  VV+AYEPVWAIGTGKVAT  QAQEVH+ +RKWLKD +SAE A +TRIIYGGSV+  NCK+LA + D+DGFLVGGASLKP F+DI+ +
Sbjct:   51 REVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLKPAFVDIVNA 247          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 9.712e-60
Identity = 111/188 (59.04%), Postives = 141/188 (75.00%), Query Frame = 3
Query:   78 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 635
            V+AQN + +  GAFTGE+S E L +  I W + GHSERR LL E ++FV  K   A++ GL VI C+GE+LE+RE+G T+ VV  Q  A+AE++S   W+ VV+AYEP+WAIGTGKVAT  QAQEVHA +RKWL + +S E A + R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:   60 VSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.268e-59
Identity = 114/190 (60.00%), Postives = 142/190 (74.74%), Query Frame = 3
Query:   72 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 635
            F +AAQN  + K GAFTGEVS  +L +  + W++LGHSERRA   E+N+ V DKVA A++ G  VIAC+GETL++RESG T  VV  Q  AIA+K+  ++W  VV+AYEPVWAIGTGKVATP QAQE HA +R W+   + A+VA   RI+YGGSVNG N + L  Q DV+GFLVGGASLKPEF+DIIK+
Sbjct:   60 FVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKA 248          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.657e-59
Identity = 110/174 (63.22%), Postives = 137/174 (78.74%), Query Frame = 3
Query:   51 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 572
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES + + DK+ +AL++GLKVIAC+GETL++RE+  T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD
Sbjct:   33 RSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.164e-59
Identity = 111/188 (59.04%), Postives = 145/188 (77.13%), Query Frame = 3
Query:   78 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 635
            VAAQN + ++ GAFTGE+S + + +  IP+VILGHSERR L +E+++ V  K   AL  GLKVI C+GETL++RE G T AV  EQ  A+ +++   +W N+V+AYEPVWAIGTGKVAT +QAQE H ++RK+L   VS +VA+ TR+IYGGSVN AN K+LA+Q D+DGFLVGGASLKPEF+DII +
Sbjct:   61 VAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLKPEFVDIINA 248          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.402e-58
Identity = 114/192 (59.38%), Postives = 140/192 (72.92%), Query Frame = 3
Query:   60 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 629
            LR+  +V +    + K GAFTGEVS  +L ++ + WVILGHSERR    E+++ V  KV+ A  QG  VIAC+GETL+QRE+  T  VV  QT AIA K++   W+ VVLAYEPVWAIGTGKVATP QAQEVH  LRKW+ +N+  +VAA  RI+YGGSVN AN   L A+PD++GFLVGGASLKPEF DII
Sbjct:   56 LRNPKYVISAENAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPEFRDII 247          
BLAST of CX675988 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.832e-58
Identity = 108/174 (62.07%), Postives = 136/174 (78.16%), Query Frame = 3
Query:   51 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 572
            +S+L     VAAQNC+    GAFTGE+S  ML +L + WVILGHSERRA+  E+++ + +KVA+AL +GLKVIAC+GETL++RE+G T AV   QTKAIA ++ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+ + RI YGGSV  ANC+ELA +PD
Sbjct:   33 RSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
The following BLAST results are available for this feature:
BLAST of CX675988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_NEUCR7.945e-6257.44Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_SCHPO1.038e-6157.89Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_AEDTO1.355e-6166.09Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_EMENI4.360e-6056.85Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_PARBA9.712e-6059.04Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_TRYBB1.268e-5960.00Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_CULPI1.657e-5963.22Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_COPC72.164e-5959.04Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_LEIME1.402e-5859.38Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_ANOME1.832e-5862.07Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66C01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66C01-F2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675988 ID=CX675988; Name=CX675988; organism=Citrus sinensis; type=EST; length=815bp
ATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGGTC
AAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAAATTGCTGGGT
TCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATGCTTGTCA
ACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAGAGCTCTT
TTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATGCACTTTC
TCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAACAGCGAG
AATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGCAATCGCA
GAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTTTG
GGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCC
ATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTGCA
GCATCAACTAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGCAA
AGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGCTT
CTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAGTGAAGAAG
AATTGAAGTTAAAGACCAAGCTACTCGGCTTGCTGATGCCTGCAGTTTTC
TCTGTTATGCGTTCTGGAAACTAGCGTTGTAATTTTTGTGGTCTGTTAAG
TGTTACCAACGCCTTTCCAGTATAATAAGTTAAATCTTCAGAATTCTTAA
GAATCTCTTTCCTAT
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