CN189084

Overview
NameCN189084
Unique NameCN189084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 61/130 (46.92%), Postives = 74/130 (56.92%), Query Frame = -1
Query:  466 WALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 804
            W LV+  H TQ CMDPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  193 WTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = -1
Query:  460 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 765
            +DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  153 VDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.789e-16
Identity = 51/116 (43.97%), Postives = 65/116 (56.03%), Query Frame = -1
Query:  457 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 804
            W  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  143 WTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.949e-16
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  457 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 771
            +C+DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  158 TCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15
Identity = 48/102 (47.06%), Postives = 59/102 (57.84%), Query Frame = -1
Query:  460 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 765
            +DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  153 VDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  454 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 765
            +DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  152 VDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  454 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 765
            +DP    AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  153 VDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -1
Query:  460 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 765
            +DP  + AK VV + GHD    +   +++  + ++  +PG K+    +AE+  V  T  V PG+   GM V E+ G PRMGP FGAM++SG++ A + +K L
Sbjct:  164 VDPLFISAKAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKRVAEIIIKDL 263          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = -1
Query:  454 SCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 771
            +C+DP  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  164 TCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CN189084 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = -1
Query:  460 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 765
            +DP  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ V GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:  163 VDPVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
The following BLAST results are available for this feature:
BLAST of CN189084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
THI4_YEAST4.621e-2246.92Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO1.701e-1647.06Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU3.789e-1643.97Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE4.949e-1643.81Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRAB1.103e-1547.06Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO4.190e-1544.23Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAR7.146e-1538.46Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_SULTO2.716e-1437.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_HALWD2.716e-1435.66Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_SULAC3.547e-1439.22Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189084 ID=CN189084; Name=CN189084; organism=Citrus sinensis; type=EST; length=804bp
GAGGGATCTTAATCACATCAGCACTTTCCCATTGGCTGATGCCTCAAGTT
ATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACAC
ATAACACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCTCCGAA
AAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGT
TCCATGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACAACATT
ATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACAACTAC
TTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCC
TGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGCTGCAGCT
AAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCTAATGCATT
CGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATA
TCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCATCAATCTCG
GCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAG
CCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAG
GCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCC
CCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCGCTTCCAT
TACATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGACACCAACG
CCCA
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