CN189079

Overview
NameCN189079
Unique NameCN189079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 9.281e-14
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   33 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            APL IGF+V + HL  I  TG GINPARSFG+AVI +    + D W+FWVGPFIG  +A   + +IL
Sbjct:  170 APLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALAVLIYDFIL 233          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   36 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            PL IGF+V + HL  I  TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +IL
Sbjct:  172 PLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 234          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   36 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            PL IGF+V + HL  I  TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +IL
Sbjct:  171 PLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   33 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILR 236
            APL +G ++   HL  I +TG  +NPARSFG AV+ N    W D W++WVGP +GA VAA  ++++ +
Sbjct:  174 APLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQN---MWIDHWVYWVGPIVGAIVAALLYKFVFK 238          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   33 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            APL IG +V + HL  I  TG GINPARSFG+AVI +    + + WIFWVGPFIG  +A   + +IL
Sbjct:  168 APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   33 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            APL IG +V + HL  I  TG GINPARSFG+AVI +    + + WIFWVGPFIG  +A   + +IL
Sbjct:  168 APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   33 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            APL IG +V + HL  I  TG GINPARSFG+AV+    + + + WIFWVGPFIG+ +A   + +IL
Sbjct:  168 APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGSALAVLIYDFIL 231          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   36 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            PL IG +V + HL  I  TG GINPARSFG++VI +  K   D WIFWVGPFIG  +A   + +IL
Sbjct:  171 PLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHNFK---DHWIFWVGPFIGGALAVLIYDFIL 233          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   33 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            APL IG +V + HL  I  TG GINPARSFG+AV+    + + + WIFWVGPFIG  +A   + +IL
Sbjct:  168 APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 3
Query:   33 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 239
            AP+ +G A+   HLA I  TG+ +NPARSFG AV  N +  W + W++W GP +G  VA   ++ + RA
Sbjct:  177 APVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV--NGDDNWANHWVYWAGPIVGGVVAGITYRALFRA 243          
The following BLAST results are available for this feature:
BLAST of CN189079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
AQP1_PIG9.281e-1455.22Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_SHEEP1.583e-1356.06Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN1.583e-1356.06Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP_HAEIX3.527e-1345.59Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP1_PONAB1.340e-1253.73Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN1.340e-1253.73Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_RAT1.750e-1252.24Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_CANFA1.750e-1254.55Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE2.286e-1252.24Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP_CICVR2.527e-1143.48Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001E14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189079 ID=CN189079; Name=CN189079; organism=Citrus sinensis; type=EST; length=571bp
GAGGCGCAAGAGACTCCCATGTTCCGGTCTTGGCACCACTCCCCATTGGG
TTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACCGGAACCGG
CATCAACCCAGCTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAGGAGA
AAGCCTGGGATGACCAATGGATCTTCTGGGTTGGACCATTCATTGGAGCT
TTCGTTGCTGCATTCTACCACCAATACATTCTCAGGGCAGCAGCCATTAA
GGCTCTTGGATCCTTCAGGAGCAATGCTTAAGCTTTAAATATGATGTCTG
GTGCTTCCAAGGTGAAAAATTTACAGCATGATCAGGAGTGCAAGTCTGTT
ACGAAGGCCCTTTAAGAAATCTCTTTTCAAGCTCTTTAGAGGGCCATTGA
ATTTGAGCTGAATTAGAGGGCTATTGAATTGTAGATATTTGAACATTATG
CATTTTATGCCTATGCTTTATCTATGTGTAAGGGTGGATTTTGGTATCCC
ATTTTAATTTTTTTCTTTGGGTGTGTTTATAAGTGGTGGTGGTGTTTTTT
ATATATCCTATTTCTCTAAAA
back to top