CN189079

Overview
NameCN189079
Unique NameCN189079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 3
Query:    9 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILR 236
            R S +   APL IG ++   HL+ I  TG  +NPARSFG AV+      W DQW++WVGP +G  +A   ++   +
Sbjct:  166 RRSDIKGSAPLAIGLSITAGHLSAIKYTGASMNPARSFGPAVVMGN---WTDQWVYWVGPIVGGILAGAVYRLFFK 238          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   39 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 230
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 251          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   39 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 230
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  194 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 254          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   39 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 230
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   39 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 230
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   24 PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            P  A LP+GF++ + HL  IP TG G+NPARSF  AVI    + + + W+FW GP +GA +AA  ++  L
Sbjct:  157 PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVI---TRNFTNHWVFWAGPLLGAALAALLYELAL 223          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQY2_YEAST (Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3
Query:   30 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVA 209
            +A LPIG ++FM H+A    TGTG+NPARS GAAV       +   WI+W+GP +GAF+A
Sbjct:  204 MAALPIGISLFMAHMALTGYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGAFLA 261          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 3
Query:    3 GARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 230
            GA D   P   AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  W+FW+ P  GA V A  ++ +
Sbjct:  154 GATDKRAPAGFAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 3
Query:    3 GARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 230
            GA D   P   AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  W+FW+ P  GA V A  ++ +
Sbjct:  154 GATDKRAPAGFAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   36 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 233
            PL IG +V + HL  I  TG G+NPARSFG+AV+    K +   WIFWVGP IG   AA  + +IL
Sbjct:  173 PLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFIL 235          
The following BLAST results are available for this feature:
BLAST of CN189079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
AQP_AEDAE2.527e-1140.79Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
AQP4_RAT2.527e-1150.00Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL2.527e-1150.00Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN3.301e-1150.00Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME3.301e-1150.00Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
MIP_CHICK4.311e-1145.71Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQY2_YEAST5.630e-1151.67Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE... [more]
AQPZ_BORPA5.630e-1141.56Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR5.630e-1141.56Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
AQPA_RANES5.630e-1151.52Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189079 ID=CN189079; Name=CN189079; organism=Citrus sinensis; type=EST; length=571bp
GAGGCGCAAGAGACTCCCATGTTCCGGTCTTGGCACCACTCCCCATTGGG
TTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACCGGAACCGG
CATCAACCCAGCTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAGGAGA
AAGCCTGGGATGACCAATGGATCTTCTGGGTTGGACCATTCATTGGAGCT
TTCGTTGCTGCATTCTACCACCAATACATTCTCAGGGCAGCAGCCATTAA
GGCTCTTGGATCCTTCAGGAGCAATGCTTAAGCTTTAAATATGATGTCTG
GTGCTTCCAAGGTGAAAAATTTACAGCATGATCAGGAGTGCAAGTCTGTT
ACGAAGGCCCTTTAAGAAATCTCTTTTCAAGCTCTTTAGAGGGCCATTGA
ATTTGAGCTGAATTAGAGGGCTATTGAATTGTAGATATTTGAACATTATG
CATTTTATGCCTATGCTTTATCTATGTGTAAGGGTGGATTTTGGTATCCC
ATTTTAATTTTTTTCTTTGGGTGTGTTTATAAGTGGTGGTGGTGTTTTTT
ATATATCCTATTTCTCTAAAA
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