CN189078

Overview
NameCN189078
Unique NameCN189078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 65/150 (43.33%), Postives = 92/150 (61.33%), Query Frame = -1
Query:  348 MASKRINKELKDLQKDPPAS*SAGPV--ADDMF-HWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 785
            +A +RI +E K++ K    S +   V   D+ F   +  I GP D+P+ GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = -1
Query:  348 SKRINKELKDLQKDPPAS*S------AGPVADDMFHWQ---ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 779
            S R+ KELK L  DPP   S      A   + D   +    A I GP D+ +A G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK +R  ++  AR  T+KYA
Sbjct:    8 SLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = -1
Query:  342 MASKRINKELKDLQKDPP---AS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 785
            MA  RI +E K++ +       S     V D     +  I GP D+P+ GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:    4 MAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = -1
Query:  351 ASKRINKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 782
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = -1
Query:  351 ASKRINKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 782
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = -1
Query:  351 ASKRINKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 782
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.587e-26
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = -1
Query:  351 ASKRINKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 782
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.465e-25
Identity = 62/149 (41.61%), Postives = 89/149 (59.73%), Query Frame = -1
Query:  342 KRINKELKDLQK-DPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYETTARSWTQKYAMG 776
            KR++KE    Q  D        PV D DMFHW+A I GP+++P+ GG +++ IH    YP  PP V F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + +T D+  Y +  R  T  YA G
Sbjct:    6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.913e-25
Identity = 60/151 (39.74%), Postives = 92/151 (60.93%), Query Frame = -1
Query:  333 RINKELKDLQKDPPAS*SAGPVADD--MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYETTARSWTQKYAMG*EG 773
            R+ KE K++Q++  A      + DD  +F W A I GPS++P+ GGVF ++   P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   + + A+ +T+  AM  +G
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.913e-25
Identity = 57/133 (42.86%), Postives = 82/133 (61.65%), Query Frame = -1
Query:  384 SKRINKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 779
            +KR+  EL  L      S SA PV D D+ +W   I GP D+P++G  F VS+ FP +YPF PP + F + ++HPN++ +G+ICLDILKE+WS    +  +LLS+ SLL +PN   PL    A ++  D  +Y
Sbjct:   10 TKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          
The following BLAST results are available for this feature:
BLAST of CN189078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBE2K_BOVIN7.766e-2743.33Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC37_ARATH7.766e-2743.95Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBCD4_DROME2.951e-2641.45Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UB2L3_MOUSE6.575e-2638.36Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN6.575e-2638.36Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN6.575e-2638.36Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB2L3_PONAB8.587e-2638.36Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBC16_SCHPO1.465e-2541.61Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBC21_ARATH1.913e-2539.74Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC11_YEAST1.913e-2542.86Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001E14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189078 ID=CN189078; Name=CN189078; organism=Citrus sinensis; type=EST; length=785bp
TTTCAAACCATGGGCAACTCTTTTTTCAAATGGGAAGTTGGGAATCATAC
AGGAATGGAGAGGTTACGTTCATTACTATAAATCACATTCTAGAAGCCTT
CAAATAGACCATTACCAACAATAAATAAAGGCAAAGGCAGCTCAATTCTG
CAGTAAATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAA
CCCCACATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCT
TTTAATATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAA
GCCATTAATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGC
ATACTTCTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAG
TCTTGTACATGTGAGCAATCTCAGGCACAAGTGGGTCATCTGGGTTCGGA
TCAGTAAGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGC
AGGGCTCCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGT
TGATGTTAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTG
AATGGATAATCAGGTGGGAAATGAATGGATACAAGAAATACACCCCCAGC
AAATGGGCTGTCTGATGGGCCCATAATTGTTGCTTGCCAATGGAACATGT
CATCAGCAACAGGGCCAGCGCTTCAAGAAGCAGGAGGGTCCTTCTGTAGG
TCCTTCAACTCCTTGTTGATCCGTTTTGAAGCCAT
back to top