CN189078

Overview
NameCN189078
Unique NameCN189078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.804e-23
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = -1
Query:  348 MASKRINKELKDLQKDPPAS*SAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 785
            +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K+A
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.804e-23
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = -1
Query:  348 MASKRINKELKDLQKDPPAS*SAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 785
            +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K+A
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.804e-23
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = -1
Query:  348 MASKRINKELKDLQKDPPAS*SAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 785
            +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K+A
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.804e-23
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = -1
Query:  348 MASKRINKELKDLQKDPPAS*SAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 785
            +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K+A
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.886e-23
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = -1
Query:  348 KRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 776
            +++ KEL+D++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.161e-22
Identity = 57/143 (39.86%), Postives = 79/143 (55.24%), Query Frame = -1
Query:  348 KRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 776
            +++ KEL+D++  PP          D+   QA I GP+ +P+A GVF V +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.161e-22
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = -1
Query:  348 MASKRINKELKDLQKDPPAS*SAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 785
            +A  R+ +E K  +KD P    A P+ +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K++
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFS 156          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.516e-22
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = -1
Query:  348 MASKRINKELKDLQKDPPAS*SAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 785
            +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K++
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFS 156          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.585e-22
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = -1
Query:  348 KRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 776
            +++ KEL+D++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.585e-22
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = -1
Query:  342 INKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 770
            + KE+  L  DPP      P  +D+     +I GP  +P+AGGVF + +    D+P  PP+  F TK+FHPN+   G IC+++LK  W   L +  VLL+I  LL  PNP+  L  E   +   D  +Y + A   T+ +AMG
Sbjct:   16 VYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMG 158          
The following BLAST results are available for this feature:
BLAST of CN189078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC9_RAT6.804e-2336.60SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE6.804e-2336.60SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN6.804e-2336.60SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK6.804e-2336.60SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBE2S_DROGR8.886e-2339.16Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBE2S_DROVI1.161e-2239.86Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBC9A_DANRE1.161e-2235.95SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC9B_DANRE1.516e-2235.95SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBE2S_DROMO2.585e-2238.46Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBE2S_DANRE2.585e-2237.06Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189078 ID=CN189078; Name=CN189078; organism=Citrus sinensis; type=EST; length=785bp
TTTCAAACCATGGGCAACTCTTTTTTCAAATGGGAAGTTGGGAATCATAC
AGGAATGGAGAGGTTACGTTCATTACTATAAATCACATTCTAGAAGCCTT
CAAATAGACCATTACCAACAATAAATAAAGGCAAAGGCAGCTCAATTCTG
CAGTAAATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAA
CCCCACATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCT
TTTAATATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAA
GCCATTAATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGC
ATACTTCTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAG
TCTTGTACATGTGAGCAATCTCAGGCACAAGTGGGTCATCTGGGTTCGGA
TCAGTAAGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGC
AGGGCTCCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGT
TGATGTTAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTG
AATGGATAATCAGGTGGGAAATGAATGGATACAAGAAATACACCCCCAGC
AAATGGGCTGTCTGATGGGCCCATAATTGTTGCTTGCCAATGGAACATGT
CATCAGCAACAGGGCCAGCGCTTCAAGAAGCAGGAGGGTCCTTCTGTAGG
TCCTTCAACTCCTTGTTGATCCGTTTTGAAGCCAT
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