CN189078

Overview
NameCN189078
Unique NameCN189078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.547e-67
Identity = 118/147 (80.27%), Postives = 129/147 (87.76%), Query Frame = -1
Query:  345 MASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 785
            MA KRI+KEL DL +DPPA  SAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.547e-67
Identity = 118/147 (80.27%), Postives = 129/147 (87.76%), Query Frame = -1
Query:  345 MASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 785
            MA KRI+KEL DL +DPPA  SAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.547e-67
Identity = 118/147 (80.27%), Postives = 129/147 (87.76%), Query Frame = -1
Query:  345 MASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 785
            MA KRI+KEL DL +DPPA  SAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.501e-67
Identity = 117/147 (79.59%), Postives = 129/147 (87.76%), Query Frame = -1
Query:  345 MASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 785
            MA KRINKEL+DL +DPPA  SAGPV DD+FHWQATIMGP DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WT+KYAM
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.501e-67
Identity = 117/147 (79.59%), Postives = 129/147 (87.76%), Query Frame = -1
Query:  345 MASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 785
            MA KRI+KEL DL +DPPA  SAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.677e-67
Identity = 117/147 (79.59%), Postives = 128/147 (87.07%), Query Frame = -1
Query:  345 MASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 785
            MA KRINKEL DL +DPPA  SAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSN SICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.309e-66
Identity = 115/146 (78.77%), Postives = 133/146 (91.10%), Query Frame = -1
Query:  345 ASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 782
            +SKRI KEL DL +DPPAS SAGPV DD++HWQA+IMGPSDSP+AGGVF +SIHFP DYPFKPPKV F TK++HPNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIA +YKTD+AKYE TA+ WT+KYA+
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYAV 148          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.710e-66
Identity = 114/147 (77.55%), Postives = 131/147 (89.12%), Query Frame = -1
Query:  345 MASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 785
            M+ KRINKEL DL +DPP+S SAGPV DD++HWQA+IMGP DSP+AGGVF +SIHFP DYP KPPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLVPEIAH+YK DR KYE TA+ WT+KYA+
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.976e-66
Identity = 115/147 (78.23%), Postives = 128/147 (87.07%), Query Frame = -1
Query:  345 MASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 785
            MA KRI KEL+DL +DPPA  SAGPV DD+FHWQATIMGP +SP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR +Y   AR WTQKYAM
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.225e-65
Identity = 116/149 (77.85%), Postives = 135/149 (90.60%), Query Frame = -1
Query:  342 MASKRINKELKDLQKDPPAS*SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 785
            MASKRI++EL+D+Q+ PPA+ SAGPVA+ D+FHWQATIMGP DSP++GGVF VSI F  DYPFKPPKV F+TKV+HPNI+S GSICLDILKEQWSPA T SKVLLSICSLLTDPNP+DPLVPEIAH+YK D++KYE+TA+ WTQKYAMG
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
The following BLAST results are available for this feature:
BLAST of CN189078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UB2D2_MOUSE1.547e-6780.27Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.547e-6780.27Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.547e-6780.27Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBCD1_DROME4.501e-6779.59Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D2_PIG4.501e-6779.59Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D3_BOVIN7.677e-6779.59Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC5_YEAST1.309e-6678.77Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_CANAL1.710e-6677.55Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC2_CAEEL4.976e-6678.23Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC12_ARATH3.225e-6577.85Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189078 ID=CN189078; Name=CN189078; organism=Citrus sinensis; type=EST; length=785bp
TTTCAAACCATGGGCAACTCTTTTTTCAAATGGGAAGTTGGGAATCATAC
AGGAATGGAGAGGTTACGTTCATTACTATAAATCACATTCTAGAAGCCTT
CAAATAGACCATTACCAACAATAAATAAAGGCAAAGGCAGCTCAATTCTG
CAGTAAATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAA
CCCCACATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCT
TTTAATATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAA
GCCATTAATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGC
ATACTTCTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAG
TCTTGTACATGTGAGCAATCTCAGGCACAAGTGGGTCATCTGGGTTCGGA
TCAGTAAGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGC
AGGGCTCCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGT
TGATGTTAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTG
AATGGATAATCAGGTGGGAAATGAATGGATACAAGAAATACACCCCCAGC
AAATGGGCTGTCTGATGGGCCCATAATTGTTGCTTGCCAATGGAACATGT
CATCAGCAACAGGGCCAGCGCTTCAAGAAGCAGGAGGGTCCTTCTGTAGG
TCCTTCAACTCCTTGTTGATCCGTTTTGAAGCCAT
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