CN189078

Overview
NameCN189078
Unique NameCN189078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 63/145 (43.45%), Postives = 93/145 (64.14%), Query Frame = -1
Query:  363 ASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 782
            A +R+ ++ K +Q+DPP+  SA P+ D++  W A I+GPSD+PF  G F + + F   YP KPP+V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  R+ Y     ET   SW
Sbjct:    5 ARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 67/143 (46.85%), Postives = 91/143 (63.64%), Query Frame = -1
Query:  348 KRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 776
            KRI KE + L  DP    +A P  D++ ++Q TI GP  SP+  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  +    +  AR WT+ YA
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.047e-31
Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = -1
Query:  363 ASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 782
            A +R+ ++ K +Q DPPA  SA PV D++  W A I+GP+D+PF  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK +R +Y     ET  +SW
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.368e-31
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = -1
Query:  360 ASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE-----TTARSWT 782
            A +R+ ++ K +Q+DPP   SA PVAD++  W A I+GP+++PF  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  R +YE     T   SWT
Sbjct:    5 ARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.368e-31
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = -1
Query:  381 KRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 776
            +R+ ++ K LQ+DPPA  S  P  D++  W+A I GP ++PF  G F +S+ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.786e-31
Identity = 62/147 (42.18%), Postives = 93/147 (63.27%), Query Frame = -1
Query:  357 ASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 782
            A +R+ ++ K +Q+D P+  SA P+ D++  W A I+GP+D+PF  G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  R++Y     ET   SW +
Sbjct:    5 AKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  381 ASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 782
            A +R+ ++ K LQ+DPPA  S  P  +++  W A I GP  +PF  G F ++I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  381 ASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 782
            A +R+ ++ K LQ+DPPA  S  P  +++  W A I GP  +PF  G F ++I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 67/147 (45.58%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  345 RINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 773
            R+ +EL+ L K+PP          +M   +A I+G S SP+ GG+F + I  P  YPF+PPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K +RA + + A+ WT+K+A+
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
BLAST of CN189078 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 59/134 (44.03%), Postives = 87/134 (64.93%), Query Frame = -1
Query:  381 ASKRINKELKDLQKDPPAS*SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 782
            A +R+ ++ K LQ+DPP   S  P  +++  W A I GP  +PF  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
The following BLAST results are available for this feature:
BLAST of CN189078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC2_CANAL6.139e-3243.45Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC13_YEAST6.139e-3246.85Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC2_NEUCR1.047e-3144.14Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_YARLI1.368e-3143.15Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC1_CAEEL1.368e-3145.45Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_DEBHA1.786e-3142.18Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBE2A_MOUSE5.197e-3144.78Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN5.197e-3144.78Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBE2T_XENLA1.158e-3045.58Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBE2B_RAT1.158e-3044.03Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189078 ID=CN189078; Name=CN189078; organism=Citrus sinensis; type=EST; length=785bp
TTTCAAACCATGGGCAACTCTTTTTTCAAATGGGAAGTTGGGAATCATAC
AGGAATGGAGAGGTTACGTTCATTACTATAAATCACATTCTAGAAGCCTT
CAAATAGACCATTACCAACAATAAATAAAGGCAAAGGCAGCTCAATTCTG
CAGTAAATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAA
CCCCACATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCT
TTTAATATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAA
GCCATTAATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGC
ATACTTCTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAG
TCTTGTACATGTGAGCAATCTCAGGCACAAGTGGGTCATCTGGGTTCGGA
TCAGTAAGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGC
AGGGCTCCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGT
TGATGTTAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTG
AATGGATAATCAGGTGGGAAATGAATGGATACAAGAAATACACCCCCAGC
AAATGGGCTGTCTGATGGGCCCATAATTGTTGCTTGCCAATGGAACATGT
CATCAGCAACAGGGCCAGCGCTTCAAGAAGCAGGAGGGTCCTTCTGTAGG
TCCTTCAACTCCTTGTTGATCCGTTTTGAAGCCAT
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