CX675983

Overview
NameCX675983
Unique NameCX675983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675983 vs. ExPASy Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 56/227 (24.67%), Postives = 101/227 (44.49%), Query Frame = -2 
Query:  165 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDV-EAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTMEK 836
            I Y  LI      GN +  +   D  +        R Y T+++   + G   EA +VL+E   +G S      NA+I G+C  G +++A A+LED+ EKG +    S++ V +G+  +   +   +  +  +      KG KPD    +S++    ++   ++  + +   LR  +P +   Y A I A    G  +   +L + M   G+  D  T  +L+  + K
Sbjct:  346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE-----KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567
The following BLAST results are available for this feature:
BLAST of CX675983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PP407_ARATH5.865e-1124.67Pentatricopeptide repeat-containing protein At5g39... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66B09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66B09-D18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675983 ID=CX675983; Name=CX675983; organism=Citrus sinensis; type=EST; length=915bp
TAAAATTATTATATATTTGCAAACAATAACAAAATTTTGCATTGGGAAAA
TCGTCTACAACTTAAATAATATTCAGATCCTACGTGAGAGAACACATGTT
TGGACAGCCAAAATCGGCCGCATTGTTTGCTGGGAGGAAAAGAATAAACT
TGTAATTAAATTTACTTTTCCATCGTACACACAAGTATTTCCTTTGTTTC
CTCATCCTCGTCTATTCCGTCAGCTTTCATGCTGTCCAAAAGCTCATCCA
CTCCCTTCCCATTTCTTATATTTGCCTTTATGAACGCATGATACATTTGC
CTGTTCATAGGGATGACAGTCCTCAGCGCAGCCACAAAAGCTTCCACGTC
TTGAACGCTACCTTCATCACCCAGCTTACTCAAAATACTTGTAATCACCT
TCGGGTCAGGTTTCCATCCCTTTCCCTCCACATATACAGAGAGGGCAGCC
TTCATGCACTGAAAACCTCTCTCTGTCTTACCTGCATCAAAGTAACCGGC
TGCAACAACTGCCCAACTGTTAGGGGTGGTAGCCTTTCCTTTCTCCACCA
AGTCTTCAAGAATGGCTTCTGCATTCTGGACCAATCCATTATTACAGTAT
CCAATAATGACAGCATTGGGTATGCGGGTATCATAGGAATTGCCAGATAA
TTCCCACTCCTTTAGCACTTTCTCAGCTTCTTCATGTTCACCAAGCTTCA
TCAAAGCTTCCAGCATGGTGATGTAGTCCCGGTTGATATACCTCTTACAA
GCTGTTTTCTCTAAATCCCACAATCTCAGGACCTCAGACTTATTCCCTAA
ACTAGCATAGAGTGATATCAAAAAGTTATAGCCAATCCCATCTTTCTGCT
CAAGTCTCTCTTCTGCTTTCTTCAAAACATCTGATGCTTTATCAATAAAG
TTAGCTTTTATGTAA
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