CN189069

Overview
NameCN189069
Unique NameCN189069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_SCHPO (Protein transport protein sec61 subunit alpha OS=Schizosaccharomyces pombe GN=sec61 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.145e-60
Identity = 102/176 (57.95%), Postives = 139/176 (78.98%), Query Frame = 2
Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            R L LV+PF PFLPE+ + +RK+PF++K+++T ++L IFLV SQ+PLYGI S+  +DP  W+R+ILA+NRGT+MELGI+PIVTS +++QLL GS++IEV+  ++ DR +    QK L I+IA G+A AYV++GMYG    LGAG  +L+ILQL  A +IV+ LDELLQKGYGLGSG
Sbjct:    5 RFLDLVKPFAPFLPEIAAPERKVPFKQKMLWTGVTLLIFLVMSQVPLYGIVSSDSSDPLLWLRMILAANRGTLMELGISPIVTSSMLVQLLVGSQLIEVNMELKSDREMYQLVQKFLAIIIAFGQATAYVLTGMYGRPQDLGAGICLLLILQLAAASLIVLLLDELLQKGYGLGSG 180          

HSP 2 Score: 40.4318 bits (93), Expect = 2.145e-60
Identity = 19/29 (65.52%), Postives = 21/29 (72.41%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPG 767
            GISLFIA   CE+I WKAFSPTT +   G
Sbjct:  180 GISLFIATINCENIFWKAFSPTTYHIANG 208          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_ASHGO (Protein transport protein SEC61 subunit alpha OS=Ashbya gossypii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 7.345e-58
Identity = 93/176 (52.84%), Postives = 134/176 (76.14%), Query Frame = 2
Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            R+L L +PF  FLPEV + +RK+P+ +K+I+T +SL IFLV  Q+PLYGI S+ G+DP  W+R +LASNRGT+MELG++PI+TS ++ Q L G+++++V+   ++DR L   AQK+  I++ +G+A+  V++G YGSVS LG   ++L+ILQL FA  IV+ LDELL KGYGLGSG
Sbjct:    4 RLLDLFKPFEAFLPEVIAPERKVPYNQKLIWTAVSLLIFLVLGQIPLYGIVSSEGSDPLQWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVNLESKQDRELFQIAQKVCAIVLTLGQAIVVVLTGNYGSVSNLGIAISLLLILQLVFASFIVLLLDELLIKGYGLGSG 179          

HSP 2 Score: 47.7506 bits (112), Expect = 7.345e-58
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLF A NI E I WKAF+PTT+N+G G+   G
Sbjct:  179 GISLFTATNIAEQIFWKAFAPTTVNNGRGTEFEG 212          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_CANGA (Protein transport protein SEC61 subunit alpha OS=Candida glabrata GN=SEC61 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.248e-57
Identity = 94/176 (53.41%), Postives = 130/176 (73.86%), Query Frame = 2
Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            R+L L +PF  FLPEV S +RK+P+ +K+I+T +SL IFLV  Q+PLYGI S   +DP YW+R +LASNRGT+MELG++PI+TS ++ Q L G+++++V  + +EDR L   AQK+  I++  G+A+  VM+G YGS S LG   ++L+I QL FA  IV+ LDELL KGYGLGSG
Sbjct:    4 RILSLFKPFEAFLPEVISPERKVPYNQKLIWTGVSLLIFLVLGQIPLYGIVSAETSDPLYWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVSLDSKEDRELYQIAQKVCAIILTFGQALVVVMTGNYGSPSDLGIAISLLLIFQLMFASFIVLLLDELLTKGYGLGSG 179          

HSP 2 Score: 48.9062 bits (115), Expect = 1.248e-57
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLF A NI E+I WKAF+PTT+NSG G    G
Sbjct:  179 GISLFTATNIAENIFWKAFAPTTVNSGRGKEFEG 212          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_YEAST (Protein transport protein SEC61 OS=Saccharomyces cerevisiae GN=SEC61 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.133e-55
Identity = 89/176 (50.57%), Postives = 131/176 (74.43%), Query Frame = 2
Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            RVL L +PF  FLPEV + +RK+P+ +K+I+T +SL IFL+  Q+PLYGI S+  +DP YW+R +LASNRGT++ELG++PI+TS ++ Q L G++++++    ++DR L   AQK+  I++ +G+A+  VM+G YG+ S LG    +L+I QL FA +IV+ LDELL KGYGLGSG
Sbjct:    5 RVLDLFKPFESFLPEVIAPERKVPYNQKLIWTGVSLLIFLILGQIPLYGIVSSETSDPLYWLRAMLASNRGTLLELGVSPIITSSMIFQFLQGTQLLQIRPESKQDRELFQIAQKVCAIILILGQALVVVMTGNYGAPSDLGLPICLLLIFQLMFASLIVMLLDELLSKGYGLGSG 180          

HSP 2 Score: 47.3654 bits (111), Expect = 1.133e-55
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLF A NI E I W+AF+PTT+NSG G    G
Sbjct:  180 GISLFTATNIAEQIFWRAFAPTTVNSGRGKEFEG 213          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SC61A_KLULA (Protein transport protein SEC61 subunit alpha OS=Kluyveromyces lactis GN=SEC61 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.233e-54
Identity = 88/176 (50.00%), Postives = 129/176 (73.30%), Query Frame = 2
Query:  155 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            RVL L +PF  +LPEV + +R +P+++K+I+T +SL +FLV  Q+PLYGI S+  +DP YW+R +LASNRGT+MELG++PI+TS ++ Q L G+++++V+   ++DR L   AQK+  IL+  G+A+  V++G YG  S LG   ++L+I QL FA   V+ LDELL KGYGLGSG
Sbjct:    4 RVLDLFKPFEAYLPEVIAPERPVPYKQKLIWTGVSLLVFLVLGQIPLYGIVSSETSDPLYWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVNMENKQDRELYQIAQKVFAILLTFGQAIVVVLTGNYGKPSDLGLAISLLLIFQLIFASFTVLLLDELLSKGYGLGSG 179          

HSP 2 Score: 45.8246 bits (107), Expect = 1.233e-54
Identity = 21/34 (61.76%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPGS*IRG 782
            GISLF A NI E I WKAF+PTT+N G G    G
Sbjct:  179 GISLFTATNIAEQITWKAFAPTTVNVGRGQEFEG 212          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SECY_METTH (Preprotein translocase subunit secY OS=Methanobacterium thermoautotrophicum GN=secY PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.207e-30
Identity = 68/169 (40.24%), Postives = 107/169 (63.31%), Query Frame = 2
Query:  176 PFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            P    LP+V+S   ++PFREK+ +T I L ++   +Q+PLYG+ S    D F   R +LA N G+++ LGI PIV++ +++QLL G KI+++D +  ED+A   G QKLL I+    EA+ +V++   GS++        ++ILQL   GI++I LDE++ K +G GSG
Sbjct:   10 PLFSVLPQVKSPGYRVPFREKLKWTGIILVLYFFLAQIPLYGL-SANAVDQFAQFRAVLAGNFGSILTLGIGPIVSASIILQLLVGGKILKLDLSRHEDKAFFQGLQKLLAIVFTFFEALIFVLT---GSLAPSAPQFVWVLILQLTIGGILIIFLDEVVSK-WGFGSG 173          

HSP 2 Score: 27.7202 bits (60), Expect = 2.207e-30
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTTINSGPG 767
            G+ LFIA  + + II  AF+P +  + PG
Sbjct:  173 GVGLFIAAGVSQEIIVGAFNPLSAPTQPG 201          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SECY_PYRFU (Preprotein translocase subunit secY OS=Pyrococcus furiosus GN=secY PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.870e-30
Identity = 64/166 (38.55%), Postives = 108/166 (65.06%), Query Frame = 2
Query:  188 FLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVS-QLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            + PEV+   R++P RE+ ++T ++L ++ V +++P+YGI      D F ++RV+LA   G+++ LGI PIVT+G+++QLL GS+II++D    EDR      Q++  + +   EA  +++ G +G V   +    A+L+ILQL   GI++I LDEL+ K +G+GSG
Sbjct:   13 WFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI-QDYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSG 176          

HSP 2 Score: 25.7942 bits (55), Expect = 4.870e-30
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTT 749
            GISLFIA  + ++I+ ++ +P T
Sbjct:  176 GISLFIAAGVSQTILTRSLNPLT 198          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SECY_PYRAB (Preprotein translocase subunit secY OS=Pyrococcus abyssi GN=secY PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.089e-29
Identity = 66/166 (39.76%), Postives = 107/166 (64.46%), Query Frame = 2
Query:  188 FLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVS-QLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            + PEV+   + +P +EK ++T ++L ++ V +++P+YGI      D F ++RV+LA   G+++ LGI PIVT+G+++QLL GS+II++D    EDR      Q++  + +   EA  +V+ G +G V   +    A L+ILQL F GII+I LDEL+ K +G+GSG
Sbjct:   13 WFPEVERPKKHVPLKEKFMWTGLALILYYVLAEIPVYGIPERI-QDYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFLEAAIWVLGGAFGRVGVDVTYAIAALMILQLAFGGIILIVLDELVSK-WGIGSG 176          

HSP 2 Score: 25.0238 bits (53), Expect = 3.089e-29
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTT 749
            GISLFIA  + + I+ ++ +P T
Sbjct:  176 GISLFIAAGVSQRILTRSLNPLT 198          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SECY_PYRHO (Preprotein translocase subunit secY OS=Pyrococcus horikoshii GN=secY PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.626e-28
Identity = 63/166 (37.95%), Postives = 105/166 (63.25%), Query Frame = 2
Query:  188 FLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVS-QLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            + PEV+   + +P +EK ++T ++L ++ V +++P+YGI      D F ++RV+LA   G+++ LGI PIVT+G+++QLL GS++I +D    EDR      Q++  + +   EA  +V+ G +G V   +    A L+I+QL   GII+I LDEL+ K +G+GSG
Sbjct:   13 WFPEVERPKKHVPLKEKFVWTGLALVLYYVLAEIPVYGIPKKI-QDYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSELIRLDLANPEDRRFYQALQRVFSVFMCFFEAAIWVLGGAFGRVGVDVTYTIATLMIIQLALGGIILIVLDELVSK-WGIGSG 176          

HSP 2 Score: 25.0238 bits (53), Expect = 5.626e-28
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  681 GISLFIAPNICESIIWKAFSPTT 749
            GISLFIA  + + I+ ++ +P T
Sbjct:  176 GISLFIAAGVSQRILTRSLNPLT 198          
BLAST of CN189069 vs. ExPASy Swiss-Prot
Match: SECY_METJA (Preprotein translocase subunit secY OS=Methanocaldococcus jannaschii GN=secY PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.100e-27
Identity = 71/169 (42.01%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  176 PFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSG 682
            P L  +PEV+   ++I F+EK+ +T I L ++ +   + +Y   +   A   +W + I AS  GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL  G QKLL I++   EAV +V +G +G ++ L    A L+I+Q+ F  II+I LDE++ K YG+GSG
Sbjct:    6 PILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEFW-QTITASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSG 169          
The following BLAST results are available for this feature:
BLAST of CN189069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_SCHPO2.145e-6057.95Protein transport protein sec61 subunit alpha OS=S... [more]
SC61A_ASHGO7.345e-5852.84Protein transport protein SEC61 subunit alpha OS=A... [more]
SC61A_CANGA1.248e-5753.41Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_YEAST1.133e-5550.57Protein transport protein SEC61 OS=Saccharomyces c... [more]
SC61A_KLULA1.233e-5450.00Protein transport protein SEC61 subunit alpha OS=K... [more]
SECY_METTH2.207e-3040.24Preprotein translocase subunit secY OS=Methanobact... [more]
SECY_PYRFU4.870e-3038.55Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_PYRAB3.089e-2939.76Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_PYRHO5.626e-2837.95Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_METJA2.100e-2742.01Preprotein translocase subunit secY OS=Methanocald... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189069 ID=CN189069; Name=CN189069; organism=Citrus sinensis; type=EST; length=798bp
GAGGAAGGGTTTTATAATATTTCAACGTTCAACCCTCTATCCTCCATCTT
GCATCGTTGGAGTTGGTGTTGCCACTGATTCCGAGCCTCTGCTCAAAGTC
AAAGCTTGTCGATCTATTCAGATCTGCTCATTTTTGAAAATGGGAGGAGG
ATTTAGAGTGCTGCATTTGGTGAGACCATTTCTTCCATTTTTGCCGGAGG
TTCAGTCAGCTGACAGGAAAATTCCCTTCCGAGAGAAGGTGATCTACACT
GTCATTTCACTTTTCATCTTTCTGGTATGCAGTCAGCTTCCACTTTATGG
CATCCATTCCACCACCGGTGCTGATCCCTTTTATTGGATGCGTGTTATTC
TTGCATCAAACCGGGGAACTGTGATGGAACTTGGGATTACCCCCATTGTG
ACTTCTGGACTTGTGATGCAACTCTTGGCTGGGTCCAAGATTATTGAGGT
GGATAACAATGTTCGTGAGGATCGTGCGCTCTTAAATGGGGCACAGAAGC
TGTTGGGCATCCTGATTGCTATCGGTGAGGCTGTTGCCTACGTGATGTCG
GGGATGTATGGAAGTGTCAGCCAGCTTGGTGCTGGGAATGCTATTCTCAT
AATCCTCCAACTTTGCTTTGCTGGAATCATTGTGATATGCCTGGATGAAC
TTCTGCAGAAGGGATATGGTTTGGGCTCTGGGAATCTCCCTTTTCATAGC
CCCTAACATTTGTGAAAGCATTATTTGGAAAGCTTTTAGCCCCACAACCA
TAAACAGTGGCCCGGGGAGCTGAATTCGAGGGTGCTGTTATTGCTCTG
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