CN189068

Overview
NameCN189068
Unique NameCN189068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_HARAN (Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 4.037e-53
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = -2
Query:  243 VNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 704
            VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  318 VNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_DISMA (Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 4.037e-53
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = -2
Query:  243 VNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 704
            VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  318 VNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = -2
Query:  243 VNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 704
            VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  318 VNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAGIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.436e-50
Identity = 104/156 (66.67%), Postives = 122/156 (78.21%), Query Frame = -2
Query:  243 VNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 704
            + LLG W++ E  G   S PV  L YY++ P S   M  +P H L Y+ FML +CA FSKTWIEVSGS+A+DVAKQLKEQQMVM GHR+ ++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  318 IGLLGVWEDVEGGGPARSYPVA-LCYYLSPPESFFSMFLDPIHGLLYITFMLGSCAFFSKTWIEVSGSAAKDVAKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFIGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 471          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_PYRSA (Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.216e-49
Identity = 93/143 (65.03%), Postives = 122/143 (85.31%), Query Frame = -2
Query:  282 VNLLGKWKESEYS--GHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFET 704
            +++LG+W+E E S  G   PVGG+AYY++   S A++ ++P HAL Y++F+L +CALFSKTWI+VSG+SA DV+KQL++QQMVM G R S++Q+ELNRYIPTAAAFGG+CIGAL+++ADFMGAIGSGTGILLAVT IYQ +ET
Sbjct:  323 IHILGRWEEPEMSVSGQMRPVGGIAYYISPLNSFAEIVSDPVHALLYIIFILASCALFSKTWIQVSGTSASDVSKQLRDQQMVMKGFRASSMQRELNRYIPTAAAFGGMCIGALSIVADFMGAIGSGTGILLAVTTIYQSWET 465          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_NEUCR (Protein transport protein SEC61 subunit alpha OS=Neurospora crassa GN=sec-61 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.903e-45
Identity = 88/145 (60.69%), Postives = 105/145 (72.41%), Query Frame = -2
Query:  270 VNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 704
            V L G W+  E +     V GL YY++ P +  D   +P H   Y+ +MLTACA+FSKTWIEVSGSS RDVAKQLK+Q +VM GHR+ ++ KEL R IPTAAAFGG CIGAL+V +D MGA+GSGTG LLAVTIIY YFE   KE
Sbjct:  320 VRLFGVWEAKEGTAQLSAVSGLVYYMSPPLNFKDALLDPIHTAVYIAYMLTACAVFSKTWIEVSGSSPRDVAKQLKDQGLVMAGHREQSMYKELKRIIPTAAAFGGACIGALSVASDLMGALGSGTGTLLAVTIIYGYFEIAAKE 464          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_DEBHA (Protein transport protein SEC61 subunit alpha OS=Debaryomyces hansenii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.151e-38
Identity = 75/145 (51.72%), Postives = 99/145 (68.28%), Query Frame = -2
Query:  270 VNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 704
            V +LG W   + +     V GLAYY+  P S  +   +P   + Y++F+L +CA+FS TWIE+SG+S RDVAKQ KEQ +V+ GHRD++  +EL + IPTAAAFGG  IGAL+V  D MG +GSGT ILL+VT IY Y+E   KE
Sbjct:  320 VKILGSWDTRQGAAQLYAVSGLAYYIQPPLSFTEALLDPIKTIIYIIFVLGSCAVFSTTWIEISGASPRDVAKQFKEQGLVIAGHRDTSAYRELKKIIPTAAAFGGATIGALSVFCDLMGTLGSGTSILLSVTTIYGYYELAMKE 464          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_YARLI (Protein transport protein SEC61 subunit alpha OS=Yarrowia lipolytica GN=SEC61 PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.258e-38
Identity = 78/145 (53.79%), Postives = 99/145 (68.28%), Query Frame = -2
Query:  270 VNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 704
            V LLG W   E      PV G+AYY+  P +  +  A+P   + Y+ F+L  CA+FS TWIE+SGSS RDVAKQ KEQ +V+ G R+++  KEL R IPTAAAFGG  IGAL+V +D +GA+ SGTGIL+AVT IY Y+E   KE
Sbjct:  320 VRLLGVWDGREGMQQLFPVSGIAYYMQPPFNAKEALADPVKTVIYIAFVLGVCAVFSATWIEISGSSPRDVAKQFKEQGLVIAGRRETSAYKELKRIIPTAAAFGGATIGALSVASDLLGALSSGTGILMAVTTIYGYYEMAAKE 464          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_SCHPO (Protein transport protein sec61 subunit alpha OS=Schizosaccharomyces pombe GN=sec61 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.394e-37
Identity = 77/145 (53.10%), Postives = 98/145 (67.59%), Query Frame = -2
Query:  270 VNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 704
            V  LG W+++  SG       L+YY++ PAS  D   +P H L Y+ F + ACALFSK WIEVSG+S RDVAKQLK QQ+VM GHR+ ++ KEL R IPTAA   G  +GAL V +D +GA+GSGT +LL  T IY Y+E  +KE
Sbjct:  327 VRFLGVWEQTATSG-------LSYYLSPPASFQDALIDPIHTLVYVFFTMFACALFSKLWIEVSGASPRDVAKQLKSQQLVMAGHREGSMYKELKRIIPTAAWLSGAVVGALAVASDLLGALGSGTAVLLCTTTIYGYYEQLQKE 464          
BLAST of CN189068 vs. ExPASy Swiss-Prot
Match: SC61A_HANAN (Protein transport protein SEC61 subunit alpha OS=Hansenula anomala GN=SEC61 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.378e-37
Identity = 76/145 (52.41%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  270 VNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 704
            V L G W     S       GLAYY+  P SL +   +P   + Y+ F+L+ CALFSKTWIE+SG++ RDVAKQ K+Q +V+ G R++++ KEL R IPTAAAFGG  IGAL+V  D +G +GSGT ILLAVT IY Y+E   KE
Sbjct:  320 VRLFGVWDARPGSAQLFASNGLAYYIQPPLSLTEALLDPIKTVIYVSFVLSVCALFSKTWIEISGTAPRDVAKQFKDQGLVIAGRRETSVYKELKRIIPTAAAFGGASIGALSVACDLLGTLGSGTSILLAVTTIYSYYEIAAKE 464          
The following BLAST results are available for this feature:
BLAST of CN189068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_HARAN4.037e-5366.67Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_DISMA4.037e-5366.67Protein transport protein Sec61 subunit alpha OS=D... [more]
SC61A_HEMAM1.175e-5266.67Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_HALRO1.436e-5066.67Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_PYRSA1.216e-4965.03Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NEUCR6.903e-4560.69Protein transport protein SEC61 subunit alpha OS=N... [more]
SC61A_DEBHA2.151e-3851.72Protein transport protein SEC61 subunit alpha OS=D... [more]
SC61A_YARLI6.258e-3853.79Protein transport protein SEC61 subunit alpha OS=Y... [more]
SC61A_SCHPO1.394e-3753.10Protein transport protein sec61 subunit alpha OS=S... [more]
SC61A_HANAN2.378e-3752.41Protein transport protein SEC61 subunit alpha OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189068 ID=CN189068; Name=CN189068; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTATTTTCACAGAAATTCTTTCTATCTTCCTTGGCGT
GTTGAACGTACAGAAACTTTCAAAAGAAAAAAGAAAGGCGGCTAAGCATT
GGCCAAACTACACACTGATCTGAATCTCTATTCATAGGTGTTAACAAGGT
ATGGCCTATGTTAAGTCTTTGAATTCTGCAACAATATTGCACAATACTAC
TCACCAACTAATCTGAAACTCAAGATCATTGGTGTATTAAAAGCCAAAGA
AGCCAAGTTCACTAGCTCTCTCCTTCTCAAACGTCTCAAAGTACTGATAT
ATGATCGTAACTGCGAGCAATATCCCAGTTCCTGACCCAATTGCTCCCAT
GAAATCAGCCAGGACTGTTAATGCACCAATGCACACTCCACCAAAGGCAG
CAGCAGTTGGTATGTACCGGTTCAGTTCCTTTTGAAGATTTGAGTCTCTA
TGTCCAGGCATCACCATTTGTTGCTCCTTAAGCTGCTTGGCCACATCCCG
GGCAGAAGACCCTGAAACTTCAATCCAAGTTTTCGAGAAAAGAGCACAAG
CAGTAAGCATAAAAACCAGGTAGAACAGAGCATGGAAAGGATTGGCTGCC
ATATCAGCCAAGCTTGCTGGTGCAGTGACATAATAAGCTAGGCCACCAAC
TGGAATAGAGTGGCCAGAATATTCAGATTCCTTCCACTTCCCTAACAGAT
TAACA
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