CN189061

Overview
NameCN189061
Unique NameCN189061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_RENSM (Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tal PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R       L  LI    V GVT+NP+IFQ AIS   +Y  Q  EL   G D+EAA +++  +D+ +AC  F  I   + G DG VS+EV PR A
Sbjct:   12 GVSIWLDDLSRERLTSGSLQKLIDEKNVVGVTTNPSIFQAAISKGTSYEQQVSELAAQGADVEAAVFQITTQDVANACDFFAGIAVASKGVDGRVSIEVDPRKA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_NEIMF (Transaldolase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tal PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D+Q AC +  + ++ T G  G+VS+EVSP L+
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVQAACDVCLAEHESTGGKTGFVSLEVSPELS 113          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_NEIMB (Transaldolase OS=Neisseria meningitidis serogroup B GN=tal PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP L+
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEIAALKQQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELS 113          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_ACIC1 (Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tal PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  352 GQSPWYDNLCRP---VTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D++ R      +L  LI    V GVT+NP IF KAI  S  Y DQ R+L   G D+  A   L   D++ AC +   ++D T+G DG VS+EV PRLA
Sbjct:   12 GVSIWIDDISRDRLQTGNLAALIRDRHVVGVTTNPTIFGKAIEGSARYQDQLRDLAVRGVDVNEALRALTAYDVRWACDVTRPVFDATDGVDGRVSIEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_NEIM0 (Transaldolase OS=Neisseria meningitidis serogroup C (strain 053442) GN=tal PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP L+
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLSPKQRYETMAVADVRAACGICLAEHESTGGKTGFVSLEVSPELS 113          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_NEIG2 (Transaldolase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=tal PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L +     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP LA
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELA 113          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_NEIG1 (Transaldolase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=tal PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L +     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP LA
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELA 113          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL1_STRAW (Transaldolase 1 OS=Streptomyces avermitilis GN=tal1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  349 EGQSPWYDNLCRP-VT--DLLPLIA-SGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            EG S W D+L R  +T  +L  LIA   V GVT+NP+IFQ AI S   Y +Q  +L   G  ++ A   +   D++ A  +   +YD T G DG VS+EV PRLA
Sbjct:   17 EGVSIWLDDLSRKRITSGNLAELIAHKHVVGVTTNPSIFQAAIGSGEGYEEQLADLAVRGVTVDEAVRMMTTADVRAAADILRPVYDATGGRDGRVSIEVDPRLA 121          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCTU (Transaldolase OS=Mycobacterium tuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    +++++G DG VS+EV PRLA
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLA 118          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCTA (Transaldolase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tal PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    +++++G DG VS+EV PRLA
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLA 118          
The following BLAST results are available for this feature:
BLAST of CN189061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL_RENSM1.598e-1343.27Transaldolase OS=Renibacterium salmoninarum (strai... [more]
TAL_NEIMF2.087e-1339.81Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_NEIMB2.725e-1338.83Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_ACIC13.559e-1343.27Transaldolase OS=Acidothermus cellulolyticus (stra... [more]
TAL_NEIM04.649e-1338.83Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_NEIG24.649e-1338.83Transaldolase OS=Neisseria gonorrhoeae (strain NCC... [more]
TAL_NEIG14.649e-1338.83Transaldolase OS=Neisseria gonorrhoeae (strain ATC... [more]
TAL1_STRAW4.649e-1342.86Transaldolase 1 OS=Streptomyces avermitilis GN=tal... [more]
TAL_MYCTU6.071e-1340.38Transaldolase OS=Mycobacterium tuberculosis GN=tal... [more]
TAL_MYCTA6.071e-1340.38Transaldolase OS=Mycobacterium tuberculosis (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189061 ID=CN189061; Name=CN189061; organism=Citrus sinensis; type=EST; length=653bp
GACGGTTTCTTCGTTTGTATCGTACTTGGTTGAAGCTTACAATCGTCGCT
CTTTATTTCTGAGTTTTTAGATTCAAGGATCCACGAGTCTTTAATGGCGA
CCATTTCGAAGCTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCC
AGATCATCATCATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAA
AACTGGGTTCAATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATA
ACCACCCTTTGAAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGA
AATGGAAGTAGTGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGA
AGGGCAGAGCCCTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGC
TTCCGCTCATTGCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATT
TTCCAGAAAGCAATATCTTCATCGAATGCTTACAATGATCAATTTAGGGA
ACTTGTACAATCTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGA
TTAAGGACATTCAAGATGCATGCAAACTTTTTGAGTCAATCTATGATGAA
ACCAATGGCGGTGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGC
TGA
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