CN189061

Overview
NameCN189061
Unique NameCN189061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCBT (Transaldolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tal PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    +++++G DG VS+EV PRLA
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLA 118          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCBP (Transaldolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tal PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    +++++G DG VS+EV PRLA
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLA 118          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCBO (Transaldolase OS=Mycobacterium bovis GN=tal PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    +++++G DG VS+EV PRLA
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLA 118          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL2_STRAW (Transaldolase 2 OS=Streptomyces avermitilis GN=tal2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  346 QEGQSPWYDNLCRP-VT--DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            +EG + W D+L R  +T  +L  LI    V GVT+NP+IFQKAIS  + Y+ Q  +L      +E A   +   D++DA  +   ++D T+G DG VS+EV PRLA
Sbjct:   10 KEGVAIWLDDLSRKRITSGNLAELIDQQHVVGVTTNPSIFQKAISQGDGYDQQVSDLAARRVTVEEAIRMITTADVRDAADILRPVFDATDGQDGRVSIEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_NEIMA (Transaldolase OS=Neisseria meningitidis serogroup A GN=tal PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP L+
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVRAACGVCLAEHESTGGKTGFVSLEVSPELS 113          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCUA (Transaldolase OS=Mycobacterium ulcerans (strain Agy99) GN=tal PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL + G D++A    +   D+++AC +    ++ + G DG VS+EV PRLA
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHDYDAQVAELAERGADVDATIRTVTTDDVRNACDVLAPRWEASGGVDGRVSIEVDPRLA 118          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCPA (Transaldolase OS=Mycobacterium paratuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI +  V GVT+NP+IFQKA +  +AY+ Q  EL   G D++A    +   D+++AC +    ++ ++G DG VS+EV PRLA
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKCVVGVTTNPSIFQKAFAEGHAYDSQIAELAARGADVDATIRTVTTDDVRNACDVLTREWENSDGVDGRVSIEVDPRLA 118          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_MYCMM (Transaldolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tal PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL + G D++A    +   D+++AC +    ++ + G DG VS+EV PRLA
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHDYDAQVAELAERGADVDATIRTVTTDDVRNACDVLAPRWEASGGVDGRVSIEVDPRLA 118          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_KOCRD (Transaldolase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=tal PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 1
Query:  322 TTLHDLYEQEGQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            TT        G S W D+L R      +L  LI    V GVT+NP IF  A++   +Y +Q  EL  +   ++ A + +   D++DAC LF  I + T G DG VS+EV PRLA
Sbjct:    2 TTPTQKLSDAGVSIWLDDLSRQRLTSGNLQKLIDTENVVGVTTNPTIFAAALADGESYREQVAELAAADTSVDDAVFRITTDDVRDACDLFAPIAEATQGVDGRVSIEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_LEIXX (Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  364 WYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            W D+L R       L  LIA   V GVT+NP IF  A++   AY++Q R L  +G  +E A +E+   D+ DA  +F  +Y  T G DG VS+EV P LA
Sbjct:   23 WLDDLSRERIASGGLQRLIAEKNVVGVTTNPTIFAAALAQGAAYDEQVRGLAATGVSVEDAIFEITTDDVADASDIFHDVYTATGGVDGRVSIEVEPGLA 122          
The following BLAST results are available for this feature:
BLAST of CN189061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL_MYCBT6.071e-1340.38Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBP6.071e-1340.38Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBO6.071e-1340.38Transaldolase OS=Mycobacterium bovis GN=tal PE=3 S... [more]
TAL2_STRAW6.071e-1341.51Transaldolase 2 OS=Streptomyces avermitilis GN=tal... [more]
TAL_NEIMA7.929e-1338.83Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_MYCUA1.036e-1240.38Transaldolase OS=Mycobacterium ulcerans (strain Ag... [more]
TAL_MYCPA1.036e-1240.38Transaldolase OS=Mycobacterium paratuberculosis GN... [more]
TAL_MYCMM1.036e-1240.38Transaldolase OS=Mycobacterium marinum (strain ATC... [more]
TAL_KOCRD1.036e-1238.60Transaldolase OS=Kocuria rhizophila (strain ATCC 9... [more]
TAL_LEIXX3.013e-1242.00Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189061 ID=CN189061; Name=CN189061; organism=Citrus sinensis; type=EST; length=653bp
GACGGTTTCTTCGTTTGTATCGTACTTGGTTGAAGCTTACAATCGTCGCT
CTTTATTTCTGAGTTTTTAGATTCAAGGATCCACGAGTCTTTAATGGCGA
CCATTTCGAAGCTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCC
AGATCATCATCATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAA
AACTGGGTTCAATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATA
ACCACCCTTTGAAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGA
AATGGAAGTAGTGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGA
AGGGCAGAGCCCTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGC
TTCCGCTCATTGCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATT
TTCCAGAAAGCAATATCTTCATCGAATGCTTACAATGATCAATTTAGGGA
ACTTGTACAATCTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGA
TTAAGGACATTCAAGATGCATGCAAACTTTTTGAGTCAATCTATGATGAA
ACCAATGGCGGTGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGC
TGA
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