CN182400

Overview
NameCN182400
Unique NameCN182400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_SYNR3 (Adenylate kinase OS=Synechococcus sp. (strain RCC307) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 41/142 (28.87%), Postives = 83/142 (58.45%), Query Frame = -2
Query:  297 IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI--EP-EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 713
            +K+GSE G   + ++  G++V   + + +++  ++ S +  +L+DGFPRN     A +A+     +P + VL  +  ++E+ +R+L R  GR DDN E IR R  V+ E + P++ +YE +G+++++ +   +  V + + A
Sbjct:   41 VKAGSELGKEAEAVMNRGELVSDALVLAIVRSRLQ-SHSGGWLLDGFPRNLAQAEALDALLSELNQPLQSVLLMELDDDELVQRLLAR--GRADDNEEVIRHRLSVYREQTAPLINHYEQRGQLKRVVSTGTIEAVAEQITA 179          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_PETMO (Adenylate kinase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=adk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 48/165 (29.09%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  315 IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 713
            +  G+E G M + ++  G++V  E+   L+++ +EE   D F++DG+PR  +     +  TK    E +  +  D SEEE+ +RI NR    N G                         R+DD  E +R+R+KV+ +++ PV++YY    K+  ID A+ V +V
Sbjct:   39 VSKGTELGKMAKAIMDRGELVSDEIMNSLVKERLEEL--DSFILDGYPRTLDQAKFLDQATKELQKEIDAAVLIDVSEEEIVKRISNRRVCPNCGKVYNLITLQPKEDEKCDVCGTKLIQRDDDKEEVVRERYKVYKKNTEPVIEYYRKNNKIITIDGAQNVEDV 201          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_STRMU (Adenylate kinase OS=Streptococcus mutans GN=adk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 48/165 (29.09%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  294 SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFD----CSEEEMERRILNRNQG--------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 701
            +E GT+ ++ I +G++VP EVT  ++++ + ES   K  FL+DG+PR  E   A + +     ++ + V+  D    C  E +  RI+NR  G                    REDD  ET+++R  V +    P+++YY  KG V  I+  + +  VF+ +  V
Sbjct:   43 TEMGTLAKSFIDKGELVPDEVTNGIVKERLSESDITKKGFLLDGYPRTIEQAHALDEILSKLNLKLDGVINIDVDPACLVERLSGRIINRKTGETYHKVFNPPADYNEDDYYQREDDKPETVKRRLDVNIAQGHPIIEYYRNKGLVYDIEGNQDINLVFETIAKV 207          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_SULNB (Adenylate kinase OS=Sulfurovum sp. (strain NBC37-1) GN=adk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = -2
Query:  300 IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNR------NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 713
            + SGSE G  I++ I +G +VP  + I  +  A++ +  D  LIDG+PR+EE   AF+ +   E +     V+    SEE    RIL R       + R DD+ E    R K++ +    + ++Y  KG +  I+  + + EV D ++
Sbjct:   43 VASGSELGKTIESYIAKGALVPLNIIIDTIVSAIKHAPVDTILIDGYPRSEEQMTAFDELVSKEDDIDLVSVIEVRVSEEVARERILGRRAEAAPGEERSDDSEEVFNDRMKIYTDPLGAIQRFYTDKGLLTIINGERTLDEVVDEME 190          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_RICFE (Adenylate kinase OS=Rickettsia felis GN=adk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 44/164 (26.83%), Postives = 83/164 (50.61%), Query Frame = -2
Query:  315 IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQG--------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 713
            IK+ +    +I N +K+G+++P+E+  ++++  +  S   + +++DG+PRN E    FE+  K E   +++FD S+E + +R+L R    N G                          R+DDN E I+KR +V+   + P++ YY+  G    +D +K   E+
Sbjct:   39 IKTSTSEAELINNYVKQGELIPNEIVNQVIKNFLLSSEYKNGYILDGYPRNLEQAKFFESFIK-EKIKIIYFDVSDELLIKRVLGRYSCKNCGKIYNSYFLQPKTDNVCDVCGSSTFDYRKDDNEEVIKKRIEVYKTETYPLIDYYKNSGNFYIVDGSKNEQEI 201          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_OENOB (Adenylate kinase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=adk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 43/140 (30.71%), Postives = 77/140 (55.00%), Query Frame = -2
Query:  300 SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTK-IEPEF--VLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 701
            +E G   ++ +  G +VP E+T  ++ + + E+       F++DG+PRN     + E+  + I+ +   V++ D SE+ +  R+L R  GREDD  E +  R  V  + ++P+V+YY  KG +  IDA   V+ V+  +K
Sbjct:   45 TELGDKAKSFMDAGNLVPDEITNGIVNERLNEADVKDAGGFILDGYPRNTSQADSLESFLRSIQQKLNAVIYLDASEKTVTNRMLGR--GREDDTPEVVAHRIDVAKKETMPLVEYYRNKGSLYTIDANGEVSVVYPKIK 182          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_CAMHC (Adenylate kinase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=adk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 44/148 (29.73%), Postives = 70/148 (47.30%), Query Frame = -2
Query:  282 IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 713
            +   SE G  I  +I  G +VP E+ I  +  A+     D  +IDG+PR+ E     + V   E +     V+  + SEE  + R+L R +G  DDN E    R KVF+E    + ++Y  KG    I+  + + E+   + A+   K
Sbjct:   42 VAKDSELGKKIDKIISGGNLVPLEIVINTITSAIHACEKDFIIIDGYPRSVEQMTELDKVLANEYDINLSAVIEVNVSEEVAKERVLGRARG-ADDNEEVFYNRMKVFVEPIEEIRKFYNEKGIFHSINGERTIEEIVTDINAIIVKK 188          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_SYNJA (Adenylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=adk PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 43/146 (29.45%), Postives = 83/146 (56.85%), Query Frame = -2
Query:  294 IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNRN--QGREDDNVET-IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 713
            +K+ +  G   +  +  G++VP EV I +++  ++ S    +++DGFPR      A E + +    + + VL  +  ++ +  R+L R   QGR DD  E  I KR +V+ E + P++ +YEA+G++R+ID  +P+  V + ++A+
Sbjct:   40 VKAQTPLGCQAKVYMDAGELVPDEVLIGMVKGQLQHSPAQGWILDGFPRTLAQAEALEELLRELGQDYDHVLNLEVPDDVVVARLLARGKEQGRSDDADEAVILKRLQVYREQTAPLIDFYEARGRLRRIDGNQPMESVQEHLRAL 185          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_STRCO (Adenylate kinase OS=Streptomyces coelicolor GN=adk PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 49/167 (29.34%), Postives = 78/167 (46.71%), Query Frame = -2
Query:  315 IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEP---EFVLFFDCSEEEMERRILNRN------------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 713
            I   +E G + ++ +  G +VP EVTI + +  ME+      FL+DGFPRN     A + + + E    + VL  +  E+E+ +RI  R                                 R+DD+ ET+RKR +V+   + P++ YY+++G V  I A  PV EV
Sbjct:   39 ISQQTELGKLAKSYMNAGNLVPDEVTIAMAKDRMEQPDAEGGFLLDGFPRNVSQAEALDELLETEGMKLDAVLDLEAPEDEVVKRIAGRRVCRNEPKHVFHVTYTPPKKEGVCDVCGGELYQRDDDSEETVRKRLEVYHTQTEPIIDYYKSQGLVATIAATGPVDEV 205          
BLAST of CN182400 vs. ExPASy Swiss-Prot
Match: KAD_PARD8 (Adenylate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=adk PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 43/144 (29.86%), Postives = 76/144 (52.78%), Query Frame = -2
Query:  300 IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI-DGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 713
            +K+ +E G + ++ I++G++VP E+ + +L   ++     K +I DGFPR      A + +      +   +L     EEE+ +R+L R +  GR DDN+ETI+ R  V+   + P+  YY  +GK   I     + E+F  +K
Sbjct:   40 MKAETELGKIAKDYIEKGQLVPDELIVDMLANVLDSKKPAKGVIFDGFPRTIPQAKALKKMLNERGTDVSVMLNLQVEEEELIKRLLERGKVSGRSDDNLETIKSRLDVYHTQTAPLADYYVGEGKHVAIKGMGTIEEIFGRIK 183          
The following BLAST results are available for this feature:
BLAST of CN182400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
KAD_SYNR37.053e-1328.87Adenylate kinase OS=Synechococcus sp. (strain RCC3... [more]
KAD_PETMO9.211e-1329.09Adenylate kinase OS=Petrotoga mobilis (strain DSM ... [more]
KAD_STRMU1.203e-1229.09Adenylate kinase OS=Streptococcus mutans GN=adk PE... [more]
KAD_SULNB1.571e-1230.41Adenylate kinase OS=Sulfurovum sp. (strain NBC37-1... [more]
KAD_RICFE1.571e-1226.83Adenylate kinase OS=Rickettsia felis GN=adk PE=3 S... [more]
KAD_OENOB1.571e-1230.71Adenylate kinase OS=Oenococcus oeni (strain BAA-33... [more]
KAD_CAMHC1.571e-1229.73Adenylate kinase OS=Campylobacter hominis (strain ... [more]
KAD_SYNJA2.052e-1229.45Adenylate kinase OS=Synechococcus sp. (strain JA-3... [more]
KAD_STRCO2.052e-1229.34Adenylate kinase OS=Streptomyces coelicolor GN=adk... [more]
KAD_PARD82.052e-1229.86Adenylate kinase OS=Parabacteroides distasonis (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002G10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182400 ID=CN182400; Name=CN182400; organism=Citrus sinensis; type=EST; length=714bp
TTTTTTCAATCAATTACTTTTTTTTTTTTTTTTAAAGCATCAATGCTGTT
ATTATAACTCTTGATCTTGCTATTACAGTCTCAATAACAAGAATACATAG
GCAAACAAGAATAAATATCATGATACACTATGAACTTCTATGACATTCTA
GTAAAACATGTGACATAATAACCTCATAATAATAAAGTACAACAATAGGC
AGCAGCCAACAACAATACCACCACCTTGATATTAAATCTGATACTCTGGA
CAGAGAAGACCTAAGCAGCAGCCTTCTCATCTTTTGGGGTAAAAACAGCT
TTAACAGCATCAAAAACCTCTGCAACAGGCTTTGCAGCATCAATCTTCCG
AACTTTACCCTTAGCTTCATAATATTGAACCACAGGGAGACTAGATTCTA
AGAAAACCTTAAACCGCTTCCTAATTGTCTCAACGTTATCATCTTCTCTT
CCCTGATTCCTATTCAAAATGCGCCTCTCCATCTCCTCCTCAGAACAGTC
AAAAAACAGAACGAATTCTGGCTCAATTTTGGTAACAGCTTCAAATGCAG
CACGATTTTCCTCGTTCCTGGGAAAACCATCGATGAGAAATTTATCATTT
CCACTTTCCTCCATTGCTTTTTGGAGAAGCTTAATTGTGACCTCTGAAGG
AACGATTTTTCCCTCTTTAATCATGTTCTGAATCATGGTTCCATTTTCAG
AGCCAGATTTGATT
back to top