CN189027

Overview
NameCN189027
Unique NameCN189027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 70/119 (58.82%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +++  +  G+D+ ++VM +M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 2.772e-33
Identity = 69/119 (57.98%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP  + L  +++  F   +D+ ++V+S+M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLPEGD-LGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.772e-33
Identity = 67/119 (56.30%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 8.065e-33
Identity = 67/119 (56.30%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.065e-33
Identity = 67/119 (56.30%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.065e-33
Identity = 67/119 (56.30%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 8.065e-33
Identity = 67/119 (56.30%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KG PCK+VE+S SKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G   +DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   34 KGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.090e-29
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = -3
Query:  248 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 619
            K RPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN DVP+V RTDYQ   I ED F+ L+  NG  K D+++P  E L  +++    EGKD  + V ++MGEE    +K+   K
Sbjct:   41 KNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNK 162          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.142e-29
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = -3
Query:  311 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLV 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +++  +  G++++
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
The following BLAST results are available for this feature:
BLAST of CN189027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IF5A2_HUMAN1.244e-3358.82Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A2_CHICK2.772e-3357.98Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RABIT2.772e-3356.30Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_RAT8.065e-3356.30Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE8.065e-3356.30Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN8.065e-3356.30Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN8.065e-3356.30Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5AL_HUMAN5.780e-3154.62Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A_NEUCR1.090e-2953.23Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5A1_CHICK4.142e-2959.22Eukaryotic translation initiation factor 5A-1 OS=G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189027 ID=CN189027; Name=CN189027; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTAAAATAACAACGACGATTTCTTTCTACCATTAT
AATTCATTAGAGAAATTGAACACCATAAAATTTTCCTCCGCCAATCAAAA
GAACTACATATTCCAGGCAGCTTGCAATTCTCACCACAAAACAAAGACGC
TACAAATATTAAAGGCAAACTCTAGATGATTAAAATATTTTTCCAAAAAA
CAGATGCAACCAGACACAGCAGATAATCACATATTGCGCAACTACGACTT
TGGGCCAATATCCTTGAGGGCACAGATCTGCTCCTCACCCATTGAAGACA
TGACAGTCAAAACCAAGTCCTTCCCCTCAGCAAAACCGTCCTTGAGCTGG
GTCAGCAGAGTCTCATCGGTTGGGAGCCTCAGATCATCCTTGGTGTTCCC
ATTTTCAGTCAGCAAACTCACAAATCCATCCTCAGAAATATCAATCAACT
GATAGTCGGTACGGTTGACATGGGGAACATCAGAGTTATGAGAAGAGGGG
ACAATATCTTCCAACTTCTTTCCACTGAAGATATCAATTCCAACAAAGTG
GCACTTAGCATGACCGTGCTTTCCAGTCTTGGAGGTGGAGACTTCCACAA
CCTTGCAGGGACGGCCTTTGA
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